View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2457_high_3 (Length: 257)
Name: NF2457_high_3
Description: NF2457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2457_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 29041160 - 29041278
Alignment:
| Q |
133 |
aatgcataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatct |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29041160 |
aatgcataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatct |
29041259 |
T |
|
| Q |
233 |
attaactgaatatgcaaat |
251 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
29041260 |
attgactgaatatgcaaat |
29041278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 29019471 - 29019584
Alignment:
| Q |
137 |
cataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatctatta |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29019471 |
cataattcaacaggcagaagagattggcagagaagggacaagattcatagaagagaacgtaaatatgaaattggtgtatgattatatgttacatctattg |
29019570 |
T |
|
| Q |
237 |
actgaatatgcaaa |
250 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29019571 |
actgaatatgcaaa |
29019584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 29019058 - 29019164
Alignment:
| Q |
11 |
ataaaatgtcaatatatgtctataagtaaagctcaaatgataaaagattggagagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccat |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
29019058 |
ataaaatgtcaatacatgtctataagtaaagttcaaatgataaaagattggagagacatttgatatgttgtgacgtaagttcgaattcgcaattctctat |
29019157 |
T |
|
| Q |
111 |
ttctttg |
117 |
Q |
| |
|
||||||| |
|
|
| T |
29019158 |
ttctttg |
29019164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 26919846 - 26919928
Alignment:
| Q |
31 |
tataagtaaagctcaaatgataaaaga-ttggagagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccattt |
112 |
Q |
| |
|
|||||||| | |||||||||||||| | ||| | ||| ||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
26919846 |
tataagtataactcaaatgataaaaaaattgtaaagatatttgatatgttgggacgtgaggatgaactcacaattctccattt |
26919928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 39992223 - 39992176
Alignment:
| Q |
33 |
taagtaaagctcaaatgataaaagattggagagaaatttgatatgttg |
80 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
39992223 |
taagtaaaactcaaatgataaagaattgcagagaaatttgatatgttg |
39992176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 15091290 - 15091360
Alignment:
| Q |
42 |
ctcaaatgataaaagattggagagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccattt |
112 |
Q |
| |
|
|||| ||| ||||| |||| | ||| ||||||||||||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
15091290 |
ctcagatggtaaaatattgcaaagacatttgatatgttggggcgtgagtttgaactcacaattctccattt |
15091360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University