View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2457_low_1 (Length: 284)
Name: NF2457_low_1
Description: NF2457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2457_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 14812582 - 14812852
Alignment:
| Q |
1 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
100 |
Q |
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| T |
14812582 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
14812681 |
T |
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| Q |
101 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812682 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
14812781 |
T |
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| Q |
201 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812782 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
14812852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 15259577 - 15259847
Alignment:
| Q |
1 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
100 |
Q |
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| T |
15259577 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
15259676 |
T |
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| Q |
101 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
200 |
Q |
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| T |
15259677 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
15259776 |
T |
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| Q |
201 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259777 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
15259847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 17521598 - 17521328
Alignment:
| Q |
1 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521598 |
catcaccaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
17521499 |
T |
|
| Q |
101 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521498 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
17521399 |
T |
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| Q |
201 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521398 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
17521328 |
T |
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