View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2458_low_1 (Length: 488)
Name: NF2458_low_1
Description: NF2458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2458_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 472
Target Start/End: Original strand, 48017586 - 48018048
Alignment:
| Q |
11 |
cagagaaagatgacttggacgtgaattaactagctaattaattttagaattatactacatatatataattaagtactaa-ctggaatgaaagaaatagtg |
109 |
Q |
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| T |
48017586 |
cagagaaagatgacttggacgtgaattaactagctaattaattttagaattatactacatatatataattaagtactaaactggaatgaaagaaatagtg |
48017685 |
T |
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| Q |
110 |
attatcacgagtttaatataatcatttgatgatcacgagcattgtggattgttgccaggaccaccatagtaaaagtatgtgccccatttgttgttgtagg |
209 |
Q |
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| T |
48017686 |
atgatcaccagtttaatataatcatttgatgatcacgagcattgtggattgttgccagggccaccatagtaaaagtatgtgccccatttgttgttgtagg |
48017785 |
T |
|
| Q |
210 |
agctcttgatattgtaacagtttttgttctgggctaaggttaagatgttggtcgcggaggtgagactgttgtcggtgtctacgatctcaaggttcctgaa |
309 |
Q |
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| T |
48017786 |
agctcttgatattgtaacagtttttgttctgggctaaggttaagatgttggtcgcggaggtgagactgttgtcggtgtctacgatctcaaggttcctgaa |
48017885 |
T |
|
| Q |
310 |
gtagcttgcttttccaaagccatcttcagcaaagtggccggaacccatttgagtggaggtgtgttggccattggcgcgactgttcactacctcgccaccc |
409 |
Q |
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| T |
48017886 |
gtagcttgcttttccaaagccatcttcagcaaagtggccggaacccatttgagtggaggtgtgttggccattggcgcgactgttcactacctcgccaccc |
48017985 |
T |
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| Q |
410 |
cattggaccatggtggcacggtcggctaagtgtgtgaataactctactggccaataccctatc |
472 |
Q |
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| T |
48017986 |
cattggaccatggtggcacggtcggctaagtgtgtgaataactctactggccaataccctatc |
48018048 |
T |
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Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 293 - 470
Target Start/End: Complemental strand, 35409829 - 35409652
Alignment:
| Q |
293 |
atctcaaggttcctgaagtagcttgcttttccaaagccatcttcagcaaagtggccggaacccatttgagtggaggtgtgttggccattggcgcgactgt |
392 |
Q |
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||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||||||| ||||||||||||||| |||| | || || || |
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| T |
35409829 |
atctcaaggttccgaaagtagcttgcttttccgaaaccatcctcggcaaagtggccggaacccatctgagtggaggtgtgtcggccgtcggtccgtgagt |
35409730 |
T |
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| Q |
393 |
tcactacctcgccaccccattggaccatggtggcacggtcggctaagtgtgtgaataactctactggccaatacccta |
470 |
Q |
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| T |
35409729 |
tcaccacctcgccaccccattctaccatggtggcgtgatcggctaagtgtgtaaatagctctgctggccaatacccta |
35409652 |
T |
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