View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2458_low_4 (Length: 210)

Name: NF2458_low_4
Description: NF2458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2458_low_4
NF2458_low_4
[»] chr7 (10 HSPs)
chr7 (127-202)||(16060374-16060449)
chr7 (1-64)||(16060512-16060575)
chr7 (1-64)||(48376787-48376850)
chr7 (140-202)||(9080206-9080268)
chr7 (145-202)||(16069010-16069067)
chr7 (147-202)||(48376637-48376692)
chr7 (1-64)||(4531802-4531865)
chr7 (27-64)||(9080338-9080375)
chr7 (3-49)||(37945878-37945924)
chr7 (145-186)||(41744134-41744175)
[»] scaffold0063 (2 HSPs)
scaffold0063 (127-202)||(28443-28518)
scaffold0063 (26-64)||(28342-28380)
[»] scaffold0091 (3 HSPs)
scaffold0091 (127-202)||(28917-28994)
scaffold0091 (1-64)||(29057-29120)
scaffold0091 (140-202)||(24720-24782)
[»] scaffold0003 (2 HSPs)
scaffold0003 (1-64)||(130795-130858)
scaffold0003 (140-202)||(130633-130695)
[»] chr6 (4 HSPs)
chr6 (1-64)||(14989427-14989490)
chr6 (140-202)||(14980460-14980522)
chr6 (1-62)||(14980315-14980376)
chr6 (27-64)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (1-64)||(13882288-13882351)
chr1 (1-64)||(51658714-51658777)
chr1 (140-202)||(13882464-13882526)
chr1 (141-199)||(51658854-51658912)
chr1 (1-49)||(1567118-1567166)
[»] scaffold0218 (2 HSPs)
scaffold0218 (1-63)||(14378-14440)
scaffold0218 (132-202)||(14237-14307)
[»] chr3 (10 HSPs)
chr3 (140-202)||(16642133-16642195)
chr3 (1-62)||(4712852-4712913)
chr3 (1-57)||(16642304-16642360)
chr3 (140-202)||(4712997-4713059)
chr3 (1-57)||(14055089-14055145)
chr3 (1-64)||(14062830-14062893)
chr3 (140-202)||(14055222-14055284)
chr3 (140-202)||(14062983-14063045)
chr3 (1-57)||(13926901-13926957)
chr3 (161-199)||(14481800-14481838)
[»] chr8 (5 HSPs)
chr8 (1-64)||(23657751-23657814)
chr8 (143-202)||(23657648-23657707)
chr8 (143-202)||(23658423-23658482)
chr8 (9-64)||(23658526-23658581)
chr8 (145-202)||(17862246-17862303)
[»] scaffold0061 (1 HSPs)
scaffold0061 (140-197)||(18099-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (145-202)||(1427-1484)
[»] chr5 (3 HSPs)
chr5 (145-202)||(25756783-25756840)
chr5 (145-202)||(25790961-25791018)
chr5 (155-199)||(24832209-24832253)
[»] scaffold1269 (1 HSPs)
scaffold1269 (1-41)||(1-41)
[»] chr2 (2 HSPs)
chr2 (145-201)||(23907788-23907844)
chr2 (1-49)||(23656513-23656561)
[»] chr4 (1 HSPs)
chr4 (145-202)||(19728447-19728504)
[»] scaffold0170 (1 HSPs)
scaffold0170 (145-201)||(17250-17306)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 16060449 - 16060374
Alignment:
Q  127 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16060449 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16060575 - 16060512
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  16060575 tatatatatgtaattaaataaatatgatgagaaatgataatgtttatatgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 48376850 - 48376787
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  48376850 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 9080268 - 9080206
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9080268 atatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 9080206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 16069010 - 16069067
Alignment:
Q  145 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  16069010 tatattgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtc 16069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 48376692 - 48376637
Alignment:
Q  147 tattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  48376692 tattgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtc 48376637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4531802 - 4531865
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||| ||||||||||| ||||||||| |||||| |||||| ||| ||| ||||||    
T  4531802 tatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattgatgatgag 4531865  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  27 atgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 37945878 - 37945924
Alignment:
Q  3 tatatatgtaattaaataaatacgatgagaaatgataatgtttatat 49  Q
    ||||||||||| |||||||||||||| ||||||||  ||||||||||    
T  37945878 tatatatgtaaataaataaatacgataagaaatgacgatgtttatat 37945924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 41744175 - 41744134
Alignment:
Q  145 tatattgactatgagaatgacgacgtataattatgatgatga 186  Q
    ||||||||  |||||||||||||||| |||||||||||||||    
T  41744175 tatattgatgatgagaatgacgacgtctaattatgatgatga 41744134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 28443 - 28518
Alignment:
Q  127 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  28443 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtc 28518  T

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Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  26 gatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

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Target: scaffold0091 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 28994 - 28917
Alignment:
Q  127 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 28917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29120 - 29057
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29120 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 24782 - 24720
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 130858 - 130795
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  130858 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

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Target: scaffold0003; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 130695 - 130633
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  130695 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14989427 - 14989490
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14989427 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 14980460 - 14980522
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14980460 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 14980522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14980315 - 14980376
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatg 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14980315 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  27 atgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 13882288 - 13882351
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13882288 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51658714 - 51658777
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  51658714 tatatatatgtaattaaataaatacgatgagaaatgataatatttatatgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 13882464 - 13882526
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13882464 atatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 13882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 51658854 - 51658912
Alignment:
Q  141 tatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgat 199  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgat 51658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1567118 - 1567166
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatat 49  Q
    |||||||||||||  |||||||||||||||||||||| ||| |||||||    
T  1567118 tatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14440 - 14378
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatga 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14440 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 14307 - 14237
Alignment:
Q  132 gtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||| ||||    
T  14307 gtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtc 14237  T

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Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 16642195 - 16642133
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16642195 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16642133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4712852 - 4712913
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatg 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4712852 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16642360 - 16642304
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642360 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 16642304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 4712997 - 4713059
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  4712997 atatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtc 4713059  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14055089 - 14055145
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 57  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14055089 tatacatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 14055145  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14062830 - 14062893
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  14062830 tatacatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagttatgatgag 14062893  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 14055222 - 14055284
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14055222 atatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtc 14055284  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 14062983 - 14063045
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14062983 atatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 14063045  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13926901 - 13926957
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 57  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  13926901 tatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 14481800 - 14481838
Alignment:
Q  161 atgacgacgtataattatgatgatgacttgaatgatgat 199  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  14481800 atgacgatgtataattatgatgatgatttgaatgatgat 14481838  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23657814 - 23657751
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  23657814 tatatatatgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag 23657751  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 23657707 - 23657648
Alignment:
Q  143 tatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23657707 tatatatagactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 23657648  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 23658482 - 23658423
Alignment:
Q  143 tatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  23658482 tatatatagactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtc 23658423  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 23658581 - 23658526
Alignment:
Q  9 tgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 64  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  23658581 tgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag 23658526  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 17862246 - 17862303
Alignment:
Q  145 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||||| ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  17862246 tatattgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtc 17862303  T

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Target: scaffold0061 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 18099 - 18156
Alignment:
Q  140 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatg 197  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  18099 atatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

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Target: scaffold1043 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 1427 - 1484
Alignment:
Q  145 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||    
T  1427 tatattgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtc 1484  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 25756783 - 25756840
Alignment:
Q  145 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25756783 tatattgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25756840  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 25791018 - 25790961
Alignment:
Q  145 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    ||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25791018 tatattgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 24832209 - 24832253
Alignment:
Q  155 atgagaatgacgacgtataattatgatgatgacttgaatgatgat 199  Q
    |||||||||| || |||||||||||||||||| ||||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgat 24832253  T

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Target: scaffold1269 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41 - 1
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataat 41  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  41 tatacatatgtaattaaataaatacgatgagaaatgataat 1  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 23907844 - 23907788
Alignment:
Q  145 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgt 201  Q
    ||||||||| |||||||||| |||||||| |||||||||| | ||||||||||||||    
T  23907844 tatattgacgatgagaatgatgacgtatatttatgatgataatttgaatgatgatgt 23907788  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23656513 - 23656561
Alignment:
Q  1 tatatatatgtaattaaataaatacgatgagaaatgataatgtttatat 49  Q
    |||||||||| || ||||||||||| ||||||||||||||| |||||||    
T  23656513 tatatatatgaaagtaaataaatacaatgagaaatgataatatttatat 23656561  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 19728447 - 19728504
Alignment:
Q  145 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 202  Q
    |||||| || ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  19728447 tatattaacgatgagaatgataaagtataattatgatgatgatttgaatgatgatgtc 19728504  T

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Target: scaffold0170 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 17306 - 17250
Alignment:
Q  145 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatgatgt 201  Q
    ||||||||| |||||||||| | |||||| |||||||||| | ||||||||||||||    
T  17306 tatattgacgatgagaatgatggcgtatatttatgatgataatttgaatgatgatgt 17250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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