View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2459_high_14 (Length: 339)

Name: NF2459_high_14
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2459_high_14
NF2459_high_14
[»] chr3 (1 HSPs)
chr3 (21-315)||(20817907-20818199)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 315
Target Start/End: Original strand, 20817907 - 20818199
Alignment:
Q  21 atcctcttcacatctttaccattcacaagccgtcgtcgttttctttttcaaagcgccgtagtccttaagtgacattgtcgttttctaagagtttgctatc 120  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||     
T  20817907 atcctcttcacatctttaccattaacaagccgtagtcattttctttttcaaagcgccatagtccttaagtgacattgtcgtttcctaagagtttgctatg 20818006  T
Q  121 gtgatttctctgtctctatgattttgttttggagaagtatgaaatcaaatgatttttgtctttagttgctatgttttctgcaaaaagaaaatttattctg 220  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20818007 gtgatttct--gtctctatgattttgttttggagaagtatgaaatcaaatgatttttgtctttagttactatgttttctgcaaaaagaaaatttattctg 20818104  T
Q  221 cagaggcaatcgttttttcaccgtaagtttgatttttccttttacaagaaaagaattcgaaaggtatgcctgcatcacatgctcttatgttttct 315  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  20818105 cagatgcaatcgttttttcaccgtaagtttgatttttccttttacaagaaaagaatttgaaaggtatgcctgcatcacatactcttctgttttct 20818199  T

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