View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_high_16 (Length: 324)
Name: NF2459_high_16
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_high_16 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 16867160 - 16866863
Alignment:
| Q |
11 |
atgaaacaagatttggtttggagatagactttgcttttggaagttgaatatgctttgttatttgttttcaagggttatttattaactcggtggttgcagt |
110 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16867160 |
atgaaacaaggtttggtttggagatagactttgcttttggaagttgaatatgctttgttatttgttttcaagggttatttattaactcggtggttgcagt |
16867061 |
T |
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| Q |
111 |
tctcatgcaacttgtcaaaaatatttagtgcatgacagtgaggaaaagttaatgacagcagggaaaaaacatgttgttaaggtacattgcaatgaagggg |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16867060 |
tctgatgcaacttgtcaaaaatatttagtgcatgacagtgaggaaaagctaatgacagcagggaaaaaacatgttgttaaggtacattgcaatgaagggg |
16866961 |
T |
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| Q |
211 |
aaaaaacaacaacctcatgtccgttcattttcacagtgagtagaaaagttgttctctttcaaaggtattgttagcannnnnnnatttcatgaacttac |
308 |
Q |
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| T |
16866960 |
aaaaaacaacaacctcatgtccgttcattttcacagtgagtagaaaagttgttctctttcaaaggtattgttagcatttttttatttcatgaacttac |
16866863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 16659015 - 16659223
Alignment:
| Q |
11 |
atgaaacaagatttggtttggagatagactttgcttttggaagttgaatatgctttgttatttgttttcaagggttatttattaactcggtggttgcagt |
110 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |||||||||| |||||||||||||| |
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| T |
16659015 |
atgaaacaaggtttggtttggagatagactttgcttttggaagttgaatatgcgttattatttgttttcatgggctatttattaaatcggtggttgcagt |
16659114 |
T |
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| Q |
111 |
tctcatgcaacttgtcaaaaatatttagtgcatgacagtgaggaaaagttaatgacagcagggaaaaaacatgttgttaaggtacattgcaatgaagggg |
210 |
Q |
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| T |
16659115 |
tctgatgcaacttgtcaaaaatatttagtgcatgacagtgaggaaaagttaatgacagcagggaaaaaacatgttgttaaggtacatggcaatgaagggg |
16659214 |
T |
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| Q |
211 |
aaaaaacaa |
219 |
Q |
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||||||||| |
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| T |
16659215 |
aaaaaacaa |
16659223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 16659247 - 16659290
Alignment:
| Q |
243 |
acagtgagtagaaaagttgttctctttcaaaggtattgttagca |
286 |
Q |
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| T |
16659247 |
acactgagtagaaaagttgttctctttcaaaggtattgttagca |
16659290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 17707413 - 17707362
Alignment:
| Q |
218 |
aacaacctcatgtccgttcattttcacagtgagtagaaaagttgttctcttt |
269 |
Q |
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| T |
17707413 |
aacaacatcatgtccattcattttctcaatgagtagaaaagttgttctcttt |
17707362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 16661196 - 16661235
Alignment:
| Q |
177 |
aaacatgttgttaaggtacattgcaatgaaggggaaaaaa |
216 |
Q |
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| T |
16661196 |
aaacatgttgtgaaggtacatggcaatgaaggggaaaaaa |
16661235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 16782304 - 16782357
Alignment:
| Q |
225 |
tcatgtccgttcattttcacagtgagtagaaaagttgttctctttcaaaggtat |
278 |
Q |
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| T |
16782304 |
tcatgtccattcatttgctcagtgcctagaaaaattgttctctttcaaaggtat |
16782357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 10178 - 10251
Alignment:
| Q |
57 |
aatatgctttgttatttgttttcaagggttatttattaactcggtggttgcagttctcatgcaacttgtcaaaa |
130 |
Q |
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| T |
10178 |
aatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaa |
10251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 11982938 - 11982894
Alignment:
| Q |
175 |
aaaaacatgttgttaaggtacattgcaatgaaggggaaaaaacaa |
219 |
Q |
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| T |
11982938 |
aaaaacaagttggtaaggtacatgacaatgaaggggaaaaaacaa |
11982894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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