View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_high_25 (Length: 260)
Name: NF2459_high_25
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 50005672 - 50005429
Alignment:
| Q |
1 |
gaaatgaaactattactttcataacgaagcatttgttgcagctgccaatctgtctgtatagccacaataaaagattctgagcctgagttatcttggaaat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50005672 |
gaaatgaaactattacttccataacgaagcatttgttgcagctgccaatctgtctgtatagccacaataaaagattctgagcctgagttatcttggaaat |
50005573 |
T |
|
| Q |
101 |
agaaaacgtccttctgatgacgctgaatccatatctttacactgcattcttcatttcccagtagctcacgtgaagaattatgaatagtcctttccatgtt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50005572 |
agaaaatgtccttctgatgacgctgaatccatatctttacactgcattcttcatttcccagtagctcacgtgaagaattatgaatagtcctttccatgtt |
50005473 |
T |
|
| Q |
201 |
gcgcacatcatttcgagtgagaaaatcgtcacggtttaagggtc |
244 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50005472 |
gcgcacatcatttcgagtgagaaaatcgccacggtttaagggtc |
50005429 |
T |
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