View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_high_3 (Length: 483)
Name: NF2459_high_3
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 10 - 465
Target Start/End: Original strand, 31041402 - 31041855
Alignment:
| Q |
10 |
atgaaatgtgctttgaaatttgatgaacctatgacaagcaagttggaacttagcacataggttcatcaacgaaatgtgcttcttgttgatgtaagacaat |
109 |
Q |
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| T |
31041402 |
atgaaatgtgctttgaaatttgatgaacctatgacaagcaagttggaag--agcacataggttcatcaacgaaatgcgcttcttgttgatgtaagacaat |
31041499 |
T |
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| Q |
110 |
gaaattgaaaatctattcttaggttaattttcttgttaaacttgatgaacctatgtgactttcatctattcttagtaaccttatcgctaatgtcggacaa |
209 |
Q |
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| T |
31041500 |
gaaattgaaaatctattcttaggttaattttcttgttaaacctgatgaacctatgtgactttcatctattcttagtaaccttatcgctaatgtcggacaa |
31041599 |
T |
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| Q |
210 |
tgaaatgtgctttgtgatctatcaatggtggcactgactgcggtacagccatgacaagcaagttggaactctgaagtataagtagaagagtccaatgttt |
309 |
Q |
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| T |
31041600 |
tgaaatgtgctttgtgatctatcaatggtggcactgaccgcggtacagccatgacaagcaagttggaactctgaagtataagtagaagagtgcaatgttt |
31041699 |
T |
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| Q |
310 |
cagactctaaatcacgaactaataacgttctaatctacgtctttataggaaaaatattgtaataaaatgatgttgcttaacttgaatacacttgatagtt |
409 |
Q |
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| T |
31041700 |
cagactctaaatcacgaactaataacgttctaatctacgtctttattggaaaaatattgtaataaaatgatgttgcttaacttgaatacacttgatagtt |
31041799 |
T |
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| Q |
410 |
gataaggtatactggaatatttgacatttatcttagaacatatcgaatggcatctt |
465 |
Q |
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| T |
31041800 |
gataaggtatactggagtatttgacatttatcttagaacatatcgaatggcatctt |
31041855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 31067418 - 31067548
Alignment:
| Q |
173 |
atctattcttagtaaccttatcgctaatgtcggacaatgaaatgtgctttgtgatctatcaatggtggcactgactgcggtacagccatgacaagcaagt |
272 |
Q |
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| T |
31067418 |
atctattcttagcaac-ttattgctaatgtca-acaatgaaatgtgctttgtgatctgtcaatggtggctctgagtgccgtacagccatgacaagcaagt |
31067515 |
T |
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| Q |
273 |
tggaactctgaagtataagtagaagagtccaat |
305 |
Q |
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| T |
31067516 |
tggaactctgaactttaagtagaagagttcaat |
31067548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 31068516 - 31068599
Alignment:
| Q |
316 |
ctaaatcacgaactaataacgttctaatctacgtctttataggaaaaatattgtaataaaatgatgttgcttaacttgaataca |
399 |
Q |
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| T |
31068516 |
ctaaatcacaaactaatgatgttctaatctacgtctttataggaaaaatgttgtaaaaaaatgatgttgcttaacttgaataca |
31068599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 393
Target Start/End: Complemental strand, 1998389 - 1998151
Alignment:
| Q |
176 |
tattcttagtaaccttatcgctaatgtcggacaatgaaatgtgctttgtgatctatcaatggt------ggcactgactgcggtacagccatgacaagca |
269 |
Q |
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| T |
1998389 |
tattcttagaaaccttatggctaatgtcggacaatgaaatgttttttgtgatctatcaaaggtcaaggtggctctgagccctgtacaaccacgacaagca |
1998290 |
T |
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| Q |
270 |
agttggaactct--------------gaagtataagtagaagagtccaatgtttca-gactctaaatcacgaactaataacgttctaatctacgtcttta |
354 |
Q |
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| T |
1998289 |
agttagaactctaaatcacgaacaatgaagtttaagtagaagagtccaatgttttaagactctaaatcacgaactagtaaccttatattctatatcttta |
1998190 |
T |
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| Q |
355 |
taggaaaaatattgtaataaaatgatgttgcttaacttg |
393 |
Q |
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| T |
1998189 |
tagagaaaactttgtaataaaatgatgctacttaacttg |
1998151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 31067323 - 31067412
Alignment:
| Q |
5 |
ctgagatgaaatgtgctttgaaatttgatgaacctatgacaagcaagttggaacttagcacataggttcatcaacgaaatgtgcttcttgtt |
96 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||| |||||| ||||||||| |
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| T |
31067323 |
ctgaaatgaaatgtgctttgaaatttgaggaacctatgacaagcaaattggaa--gagcgcataggttcatcaataaaatgtacttcttgtt |
31067412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 31098560 - 31098525
Alignment:
| Q |
5 |
ctgagatgaaatgtgctttgaaatttgatgaaccta |
40 |
Q |
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| T |
31098560 |
ctgaaatgaaatgtgctttgaaatttgatgaaccta |
31098525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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