View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_high_34 (Length: 237)
Name: NF2459_high_34
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 56230716 - 56230939
Alignment:
| Q |
1 |
ctctatgattaaagcaaattaatagatatatcaccggtgattctgatttgtatcttaaaag---cattttaaaatgtgccatcaaatgttttggttaaac |
97 |
Q |
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| T |
56230716 |
ctctaagattaaagcaaattaatagatatatcaccagtgattctgatttgtatcttaaaaaaatcattttaaaatgtgccatcaaatgttttggttaaac |
56230815 |
T |
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| Q |
98 |
cttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtcaatggtactacagaacggca |
197 |
Q |
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| T |
56230816 |
cttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtcaatggtactacagaacggca |
56230915 |
T |
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| Q |
198 |
cacttgatactgcacgagacaatg |
221 |
Q |
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| T |
56230916 |
cacttgatactgcacgagacaatg |
56230939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 39188524 - 39188660
Alignment:
| Q |
77 |
catcaaatgttttggttaaaccttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggt |
176 |
Q |
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||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
39188524 |
catcaaatgttatgatttaaccttttaatatatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctaccta---tgcagggt |
39188620 |
T |
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| Q |
177 |
caatggtactacagaacggcacacttgatactgcacgaga |
216 |
Q |
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| T |
39188621 |
cagaggtggtacaaaacggcacacttgatactccacgaga |
39188660 |
T |
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