View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_high_36 (Length: 233)
Name: NF2459_high_36
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4639511 - 4639290
Alignment:
| Q |
1 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatattaactcctcagaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4639511 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatattaactcctcagaaat |
4639412 |
T |
|
| Q |
101 |
ctatcatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacagctaaatccaatgtctgtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4639411 |
ctatcatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacagctaaatccaatgtctgtat |
4639312 |
T |
|
| Q |
201 |
tttatttatttaagaatgatgt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
4639311 |
tttatttatttaagaatgatgt |
4639290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48511739 - 48511966
Alignment:
| Q |
1 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaac---caccaacgtaatattaactcctcaga |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||| |||||||||||||||||| |
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| T |
48511739 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtgactatcaaaatgaaattcatgaaacaaccaccaacttaatattaactcctcaga |
48511838 |
T |
|
| Q |
98 |
aatctatcatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacagctaaatccaatgtctg |
197 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48511839 |
aatctattatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacaactaaatccaatgtctg |
48511938 |
T |
|
| Q |
198 |
tat---tttatttatttaagaatgatgt |
222 |
Q |
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| | |||||||||||||||||||||| |
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| T |
48511939 |
tgtttatttatttatttaagaatgatgt |
48511966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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