View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2459_high_38 (Length: 230)

Name: NF2459_high_38
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2459_high_38
NF2459_high_38
[»] chr5 (7 HSPs)
chr5 (19-212)||(15823604-15823797)
chr5 (34-166)||(15813433-15813562)
chr5 (109-187)||(15721058-15721136)
chr5 (36-184)||(15723495-15723640)
chr5 (109-166)||(15717236-15717293)
chr5 (36-166)||(15729716-15729844)
chr5 (141-212)||(15819363-15819434)
[»] chr2 (1 HSPs)
chr2 (34-166)||(33100110-33100239)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 15823604 - 15823797
Alignment:
Q  19 atgggccattcagtaatgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacac 118  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  15823604 atgggccattcaataatgttctagaccaacaaacaatgtcagccattaagatctaccaacaaaatttcaatctccaagttactaatggctacctaaacac 15823703  T
Q  119 cgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaagga 212  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  15823704 tgagacttcacaacaaatcttgttaccacgatgtggtgttcctgatatgaatttcgagtacagcttcaccaatgataagtcgtttcccaaagga 15823797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 15813433 - 15813562
Alignment:
Q  34 atgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaaca 133  Q
    ||||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||| |    
T  15813433 atgttctagacgaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggta---acctaaacaccgagactttacaaaa 15813529  T
Q  134 aatcttgttaccacgttgtggtgttcctgatat 166  Q
    ||||| |||||| || |||||| ||||||||||    
T  15813530 aatctcgttaccgcgatgtggtattcctgatat 15813562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 15721058 - 15721136
Alignment:
Q  109 acctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatattaatttcgagtacagcttcac 187  Q
    ||||| || ||||||||| ||||| | ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||    
T  15721058 acctagactccgagactttacaactactcttgttaccaagatgtggtgttcctgatatgaattttgagtacagcttcac 15721136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 15723495 - 15723640
Alignment:
Q  36 gttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaacaaa 135  Q
    ||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||||||     
T  15723495 gttctagacaaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggtc---acctaaacaccgagactttacaacaat 15723591  T
Q  136 tcttgttaccacgttgtggtgttcctgatattaatttcgagtacagctt 184  Q
    ||| ||| ||| | |||||| |||||||||| || | ||||||| ||||    
T  15723592 tctcgtttccaagatgtggtattcctgatatgaaatacgagtacggctt 15723640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 15717236 - 15717293
Alignment:
Q  109 acctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatat 166  Q
    ||||| |||||||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  15717236 acctagacaccgagactttacaacaaatcatgttaccacgatgtggtgttcccgatat 15717293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 15729716 - 15729844
Alignment:
Q  36 gttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcac-aacaa 134  Q
    ||||||||| |  ||||||| || || |||||||  |||||||||  |||||| ||||||||||||| |    |||||||||||||||||| || || ||    
T  15729716 gttctagacgaggaaacaatatccgctattaagacgtaccaacaatttttcaatctccaagttactggtc---acctaaacaccgagactttacaaaaaa 15729812  T
Q  135 atcttgttaccacgttgtggtgttcctgatat 166  Q
    |||| |||||| || |||||| ||||||||||    
T  15729813 atctcgttaccgcgatgtggtattcctgatat 15729844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 15819363 - 15819434
Alignment:
Q  141 ttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaagga 212  Q
    |||||||| ||||||||||||||||| ||||||  ||||  || |||||||||||| |||| ||| ||||||    
T  15819363 ttaccacgatgtggtgttcctgatatgaatttcacgtacgactccaccaatgatatatcgtatccgaaagga 15819434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 33100110 - 33100239
Alignment:
Q  34 atgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaaca 133  Q
    ||||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||| |    
T  33100110 atgttctagacgaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggta---acctaaacaccgagactttacaaaa 33100206  T
Q  134 aatcttgttaccacgttgtggtgttcctgatat 166  Q
    ||||| |||||| || |||||| ||||||||||    
T  33100207 aatctcgttaccgcgatgtggtattcctgatat 33100239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University