View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2459_high_41 (Length: 226)
Name: NF2459_high_41
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_high_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 55175732 - 55175939
Alignment:
| Q |
1 |
acaagtgacatgttacttgctccacattcaaagaaggttgaagtcaaaacgcaacaagggaataaaagtaaagaggctgaagcatatgcagcagcactcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55175732 |
acaagtgacatgttacttgctccacattcaaagaaggttgaagtcaaaacgcaacaagggaataaaagtaaagaggctgaagcatatgcagcagcactcg |
55175831 |
T |
|
| Q |
101 |
aggttccttctttaggatctgtacgcgtatcggagaatagaaagtcacagaaggcggctttctgtccaaaagaagttaaaaggataattgaatctgaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55175832 |
aggttccttctttaggatctgtacgcgtatcggagaatagaaagtcacagaaggcggctttctgtccaaaagaagttaaaaggataattgaatctgaagc |
55175931 |
T |
|
| Q |
201 |
cctgaaac |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
55175932 |
cctgaaac |
55175939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 55178802 - 55178894
Alignment:
| Q |
111 |
tttaggatctgtacgcgtatcggagaatagaaagtcacagaaggcggctttctgtccaaaagaagttaaaaggataattgaatctgaagccct |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
55178802 |
tttaggatctgtacgcgtataacagaatagaaagccacagatggcaactttctgtccaaaagaagttaaaaagataattgaatctgaatccct |
55178894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 55178718 - 55178795
Alignment:
| Q |
1 |
acaagtgacatgttacttgctccacattcaaagaaggttgaagtcaaaacgcaacaagggaataaaagtaaagaggct |
78 |
Q |
| |
|
|||||| ||||||||||||||||||| || || |||||||||||||||| | |||||||||| ||| |||| ||||| |
|
|
| T |
55178718 |
acaagttacatgttacttgctccacaatccaacaaggttgaagtcaaaatgtgacaagggaatgaaattaaacaggct |
55178795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University