View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2459_high_43 (Length: 218)

Name: NF2459_high_43
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2459_high_43
NF2459_high_43
[»] chr1 (13 HSPs)
chr1 (14-202)||(2011838-2012020)
chr1 (14-142)||(2010482-2010610)
chr1 (14-134)||(2019703-2019823)
chr1 (14-134)||(2006401-2006527)
chr1 (65-142)||(6601779-6601856)
chr1 (74-111)||(2948497-2948534)
chr1 (74-111)||(3340472-3340509)
chr1 (70-111)||(4323139-4323180)
chr1 (76-137)||(9818941-9819002)
chr1 (74-121)||(3349336-3349383)
chr1 (83-142)||(3378667-3378726)
chr1 (73-111)||(3361682-3361720)
chr1 (64-142)||(6592526-6592604)
[»] chr2 (3 HSPs)
chr2 (60-114)||(20923438-20923492)
chr2 (61-111)||(20952962-20953012)
chr2 (57-111)||(20927040-20927094)
[»] chr5 (1 HSPs)
chr5 (74-111)||(17969825-17969862)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 2012020 - 2011838
Alignment:
Q  14 agatgaaaaatccacctatcaagagcagtcgcactgatcacaacacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatggt 113  Q
    ||||||||||||||||||||||||||||||||||| || | | || ||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2012020 agatgaaaaatccacctatcaagagcagtcgcactaatgagaccaaaaggagagagcttgaacttgttgattggcccataataaagtaaaagtacatggt 2011921  T
Q  114 cgataattgccaaaagctttctcttgatagctgcagggtggtcagaaatcgatgttgcagacacacattgtgaatcaaacacaagattt 202  Q
    |||||||||||||||||||||||||||||||||||||||| |||      |||||||||||||||||||||||||||||||||||||||    
T  2011920 cgataattgccaaaagctttctcttgatagctgcagggtgttca------gatgttgcagacacacattgtgaatcaaacacaagattt 2011838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 2010610 - 2010482
Alignment:
Q  14 agatgaaaaatccacctatcaagagcagtcgcactgatcacaacacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatggt 113  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  2010610 agatgaaaaatctacctatcaaaagcagtcacactgatcacaccacaatcagagagcttgaacttgttgattggcccggaataaagtaaaagtacatgat 2010511  T
Q  114 cgataattgccaaaagctttctcttgata 142  Q
    | |||||||||||||||||||||| ||||    
T  2010510 caataattgccaaaagctttctctcgata 2010482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 2019823 - 2019703
Alignment:
Q  14 agatgaaaaatccacctatcaagagcagtcgcactgatcacaacacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatggt 113  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  2019823 agatgaaaaatccacctgtcaagagcagtcacactgatcacaccacaatcagagagcttgaacttgttgattggcccggaataaagtaaaagtacatgat 2019724  T
Q  114 cgataattgccaaaagctttc 134  Q
    | |||||||||||||||||||    
T  2019723 caataattgccaaaagctttc 2019703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 2006527 - 2006401
Alignment:
Q  14 agatgaaaaatccacctatcaagagcagtcgcactgatca------caacacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagta 107  Q
    |||||||||||||||||||||||||||||| |||| || |      || |||||  ||||| || |||||||||||||||||||||||||||||||||||    
T  2006527 agatgaaaaatccacctatcaagagcagtctcactaatgagattgacaccacaacgagagatctggaacttgttgattggcccagaataaagtaaaagta 2006428  T
Q  108 catggtcgataattgccaaaagctttc 134  Q
    | || || |||||| ||| ||||||||    
T  2006427 cctgatcaataatttccataagctttc 2006401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 6601779 - 6601856
Alignment:
Q  65 gagagcttgaacttgttgattggcccagaataaagtaaaagtacatggtcgataattgccaaaagctttctcttgata 142  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||| || ||||||  | |||| || |||||||||    
T  6601779 gagagcttgaactttttgattggcccagaatggagtaaaagtacatgatcaataattctcgaaagtttgctcttgata 6601856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 2948497 - 2948534
Alignment:
Q  74 aacttgttgattggcccagaataaagtaaaagtacatg 111  Q
    |||||||||||||||||||||| |||||||||||||||    
T  2948497 aacttgttgattggcccagaatgaagtaaaagtacatg 2948534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 3340509 - 3340472
Alignment:
Q  74 aacttgttgattggcccagaataaagtaaaagtacatg 111  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3340509 aacttgttgattggcccagaatgaagtaaaagtacatg 3340472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 4323139 - 4323180
Alignment:
Q  70 cttgaacttgttgattggcccagaataaagtaaaagtacatg 111  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  4323139 cttgaacatgttgattggcccagaatgaagtaaaagtacatg 4323180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 9818941 - 9819002
Alignment:
Q  76 cttgttgattggcccagaataaagtaaaagtacatggtcgataattgccaaaagctttctct 137  Q
    ||||||||||||||| |||| ||||||||||||||| || ||||||  ||||| ||||||||    
T  9818941 cttgttgattggcccggaatgaagtaaaagtacatgatcaataattctcaaaaactttctct 9819002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 3349383 - 3349336
Alignment:
Q  74 aacttgttgattggcccagaataaagtaaaagtacatggtcgataatt 121  Q
    |||||||||||| ||||||||| ||||||||||||||| || ||||||    
T  3349383 aacttgttgattagcccagaatgaagtaaaagtacatgatcaataatt 3349336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 3378726 - 3378667
Alignment:
Q  83 attggcccagaataaagtaaaagtacatggtcgataattgccaaaagctttctcttgata 142  Q
    ||||||||||||| ||||||||||||||| |||||||||  ||||| ||| |||| ||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgata 3378667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 3361720 - 3361682
Alignment:
Q  73 gaacttgttgattggcccagaataaagtaaaagtacatg 111  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatg 3361682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 6592526 - 6592604
Alignment:
Q  64 agagagcttgaacttgttgattggcccagaataaagtaaaagtacatggtcgataattgccaaaagctttctcttgata 142  Q
    ||||||||||||||| |||||||| ||||||   |||||||||||||| || ||||||    ||||||| |||||||||    
T  6592526 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgata 6592604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 20923492 - 20923438
Alignment:
Q  60 aatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatggtc 114  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  20923492 aatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtc 20923438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 20953012 - 20952962
Alignment:
Q  61 atcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatg 111  Q
    |||| ||| ||||||| |||||||||||||||||| |||||||||||||||    
T  20953012 atcatagaacttgaacatgttgattggcccagaatgaagtaaaagtacatg 20952962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 20927094 - 20927040
Alignment:
Q  57 cacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatg 111  Q
    |||| ||||||| ||||||| |||||||||||||| ||| ||||||||| |||||    
T  20927094 cacactcagagaacttgaacatgttgattggcccataatgaagtaaaaggacatg 20927040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 17969862 - 17969825
Alignment:
Q  74 aacttgttgattggcccagaataaagtaaaagtacatg 111  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  17969862 aacttgttgattggccctgaatgaagtaaaagtacatg 17969825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University