View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_high_9 (Length: 366)
Name: NF2459_high_9
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 11195354 - 11195502
Alignment:
| Q |
203 |
atattaagcaagttgcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgac |
302 |
Q |
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| T |
11195354 |
atattaagcaagttgcaaagagggaaaagattaatcttaacatatatacagaagtcatatacatttgtaagcacgttgaataaattatcatatagttgac |
11195453 |
T |
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| Q |
303 |
attgtcaccataaacttgaaatttaacaatacaatttgaatgaagtttt |
351 |
Q |
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| T |
11195454 |
attgtcaccttaaacttgaaattttacaatacaatttgaatgaagtttt |
11195502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 11154907 - 11155055
Alignment:
| Q |
203 |
atattaagcaagttgcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgac |
302 |
Q |
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| T |
11154907 |
atattaagcaagttgcaaagagggaaaagattaaccttgacatatatacagaagtcatatacatttataagcacgttgaacaaattatcatatagttgac |
11155006 |
T |
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| Q |
303 |
attgtcaccataaacttgaaatttaacaatacaatttgaatgaagtttt |
351 |
Q |
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| T |
11155007 |
attgtcaccttaaacttgaaattttacaatacaatttgaatgaagtttt |
11155055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 11212961 - 11212919
Alignment:
| Q |
69 |
atgagtaatcggtgaaaatgctcgtttgatgtggttttcgatg |
111 |
Q |
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| T |
11212961 |
atgagtaattggttaaaatgcacgtttgatgtggttttcgatg |
11212919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 11246591 - 11246553
Alignment:
| Q |
313 |
taaacttgaaatttaacaatacaatttgaatgaagtttt |
351 |
Q |
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| T |
11246591 |
taaactagaaatttcacaatacaatttgaatgaagtttt |
11246553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 11279830 - 11279788
Alignment:
| Q |
69 |
atgagtaatcggtgaaaatgctcgtttgatgtggttttcgatg |
111 |
Q |
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| T |
11279830 |
atgagtaattggttaaaatgcacgtttgatgtggttttcgatg |
11279788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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