View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_low_10 (Length: 371)
Name: NF2459_low_10
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 4601324 - 4600986
Alignment:
| Q |
18 |
gagattaaaacagattctactaaatcatgcaggccatgtaaatttaacgagaatcatatgaatttcaatgaataaaatagtttgttaatgacatatttgg |
117 |
Q |
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| T |
4601324 |
gagattaaaacagattctactaaatcatgcaggccatgtaaatttaacgagaatcatatgaatttcaatgaataaaatagtttgttaatgacatatttgg |
4601225 |
T |
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| Q |
118 |
attgaatgtagctgcacatgttagtttcttgctctacactgacacatgtgtgacaccaccaaatacacattaaacatgaagtgttggtgctcagtaactc |
217 |
Q |
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| T |
4601224 |
attgaatgtagctgcacatgttagtttcttgttctacactgacacatgtgtgacaccaccaaatacacattaaacatgaagtgttg-------gtaactc |
4601132 |
T |
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| Q |
218 |
acgtttctttagaggcacaaaaggttaaaaatttagttttgacccttgtgggtttgataagcgtgctttgtttgcatatattgcatgttagtgttacaaa |
317 |
Q |
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| T |
4601131 |
acgtttctttagaggcacaaaaggttaaaaatttagttttgacccttgtgggtttgataagcgtgctttgtttgcatatattgcatgttagtgttacaaa |
4601032 |
T |
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| Q |
318 |
aagactaattatttgtcatttggtggggttggttgttaatgatgat |
363 |
Q |
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| T |
4601031 |
aagactaattatttgtcatttggtgtggttggttgttaatgatgat |
4600986 |
T |
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