View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_low_12 (Length: 359)
Name: NF2459_low_12
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 7005550 - 7005220
Alignment:
| Q |
18 |
acaaaggtgtctttcaactaagggtaaaaccgtgagcgcttacacaagacccaaagtgaaaaatacctacggaaaatggtgcaatagacttgagtttcaa |
117 |
Q |
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| T |
7005550 |
acaaaggtgtctttcaactaagggtgaaaccgtgagcgcttacacaagacccaaagtgaaaaatacctacggaaaatggtgcaatagacttgagtttcaa |
7005451 |
T |
|
| Q |
118 |
ccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaagactacatagatatggtgacaacacgagtctnnnnnnnnnnnncgctac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
7005450 |
ccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaaga-tacatagatatggtgacaacacgagtctaaaaagaaaaaacgctac |
7005352 |
T |
|
| Q |
218 |
attaaaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaat |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7005351 |
attaaaagagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaat |
7005252 |
T |
|
| Q |
318 |
tattcatgtaacaacgttcccatttccctatg |
349 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
7005251 |
cattcatgtaacaacgttcccatttccctatg |
7005220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 7015342 - 7015012
Alignment:
| Q |
18 |
acaaaggtgtctttcaactaagggtaaaaccgtgagcgcttacacaagacccaaagtgaaaaatacctacggaaaatggtgcaatagacttgagtttcaa |
117 |
Q |
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||||||| ||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||| || || | |||||||| ||| |||||||| | |
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| T |
7015342 |
acaaaggcgtctttcaactaagggtgaagccgtgagggcttacacaagacccagagtgaaaaatacctccg-aatacggtgcaatggacatgagtttcga |
7015244 |
T |
|
| Q |
118 |
ccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaagactacatagatatggtgacaacacgagtctnnnnnnnnnnnncgctac |
217 |
Q |
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||||||||||||||||||| |||||||| || || ||||||||||||||||||||||| | |||||||||||||||||| || |||||| |
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| T |
7015243 |
ccaccttctaaagcaaaatgctcacttttgatgagcttaatccaagaaaaagactacaaacatatggtgacaacacgagcctaaaaagaaaaaacgctac |
7015144 |
T |
|
| Q |
218 |
attaaaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaat |
317 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7015143 |
attaaaagagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaacgctaccaaatatatcatactcaaaat |
7015044 |
T |
|
| Q |
318 |
tattcatgtaacaacgttcccatttccctatg |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
7015043 |
cattcatgtaacaacgttcccatttccctatg |
7015012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 90 - 349
Target Start/End: Complemental strand, 6995857 - 6995598
Alignment:
| Q |
90 |
aaaatggtgcaatagacttgagtttcaaccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaagactacatagatatggtgaca |
189 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||| |
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|
| T |
6995857 |
aaaacggtgcaatagacttgagttccagccaccttctaaagcaaaatgctcactttagatgagcttaatccaagaaaaacactacatagatatggtgaca |
6995758 |
T |
|
| Q |
190 |
acacgagtctnnnnnnnnnnnncgctacattaaaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactca |
289 |
Q |
| |
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|||||||||| | ||||||||||| | ||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
6995757 |
acacgagtctaaaaagaaaaaactctacattaaaatagaaaatattcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactca |
6995658 |
T |
|
| Q |
290 |
aagctaccaaatatatcatactcaaaattattcatgtaacaacgttcccatttccctatg |
349 |
Q |
| |
|
|||||||||| || |||| |||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
6995657 |
aagctaccaaggatctcattctcaaaatcattagagtaacaacgttcccatttccctatg |
6995598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 7041219 - 7041079
Alignment:
| Q |
214 |
ctacatta-aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactc |
312 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| |
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| T |
7041219 |
ctacattataaagagaaaatattcacctgtatatcaaagagcgatatccttttttgcttagatttgcatgaaactcaacgctactaaagatctcacgctc |
7041120 |
T |
|
| Q |
313 |
aaaattattcatgtaacaacgttcccatttccctatgcttc |
353 |
Q |
| |
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||||| | | ||||||| |||||||||||||||||||||| |
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| T |
7041119 |
aaaatcagtagtgtaacatcgttcccatttccctatgcttc |
7041079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 228 - 353
Target Start/End: Complemental strand, 7028756 - 7028631
Alignment:
| Q |
228 |
aaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaattattcatgta |
327 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||| || ||| |||||||| | | |||| |
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| T |
7028756 |
aaaatcttcacctgtatatcaaagagcggtatccttttttgcttagattcacatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgta |
7028657 |
T |
|
| Q |
328 |
acaacgttcccatttccctatgcttc |
353 |
Q |
| |
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||| |||||||||||||||||||||| |
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| T |
7028656 |
acatcgttcccatttccctatgcttc |
7028631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 214 - 349
Target Start/End: Complemental strand, 7057177 - 7057041
Alignment:
| Q |
214 |
ctacatta-aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactc |
312 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| |
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| T |
7057177 |
ctacattagaaagagaaaatcttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacgctactaaaaatctcacgctc |
7057078 |
T |
|
| Q |
313 |
aaaattattcatgtaacaacgttcccatttccctatg |
349 |
Q |
| |
|
||||| | | |||||| ||||||||||| |||||| |
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|
| T |
7057077 |
aaaatcagtacggtaacatcgttcccattttcctatg |
7057041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 7048338 - 7048261
Alignment:
| Q |
214 |
ctacatta-aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaa |
290 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
7048338 |
ctacattagaaagagaaaatcttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaa |
7048261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 347
Target Start/End: Complemental strand, 7022025 - 7021900
Alignment:
| Q |
222 |
aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaattatt |
321 |
Q |
| |
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||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||| || || | |||||||| | | |
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| T |
7022025 |
aaagagaaaaacttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacgctgctaaagatctccttctcaaaatcagt |
7021926 |
T |
|
| Q |
322 |
catgtaacaacgttcccatttcccta |
347 |
Q |
| |
|
|||||||||| | |||||| |||| |
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|
| T |
7021925 |
attgtaacaacgataccattttccta |
7021900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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