View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_low_13 (Length: 359)
Name: NF2459_low_13
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 14908544 - 14908204
Alignment:
| Q |
1 |
gacaggggacaatagccaagacatcctagacattagaaagcctaaaactagacatctttaatattaatcaaaatcaaaatttcccaaaaactactactca |
100 |
Q |
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| T |
14908544 |
gacaggggacaatagccaagacatcctagacattagaaagcctaaaattagacatctttaatattaatcaaaatcaaaatttcccaaaaagtactactca |
14908445 |
T |
|
| Q |
101 |
taatttatacgtattagaataataaaaagagtgaacgacatttgaatgctagtatcatacctatattatattcctacaattttgtccctacccttcaaac |
200 |
Q |
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| T |
14908444 |
taatttatacgtattagagtaataaaaagtgtgaacgacatttgaatgccagtattatacctatattatattcctataattttgtccctacccttcaaac |
14908345 |
T |
|
| Q |
201 |
ttccaaacaaacccttagcgaggacgaaaaaagggaatcactataaatatactacacacaatttctgcataacccatgttatgctatgttatgagtaggt |
300 |
Q |
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| T |
14908344 |
ttccaaacaaacccttagcgaggacgaaaaaagggaaccactataaatagactacacacaatttctgtataacccatgttatgctatgttatgagtaggt |
14908245 |
T |
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| Q |
301 |
cacaatggaagatcaagtgaaatcatttgcaacgattcaaa |
341 |
Q |
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| T |
14908244 |
cacaatggaagatcaactgaaatcatttgcaacgattcaaa |
14908204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 51274791 - 51274755
Alignment:
| Q |
301 |
cacaatggaagatcaagtgaaatcatttgcaacgatt |
337 |
Q |
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| T |
51274791 |
cacaatggaagatcaagtgaaatcatttgcaacgatt |
51274755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 9059244 - 9059178
Alignment:
| Q |
64 |
ttaatcaaaatcaaaatttcccaaaaactactactcataatttatacgtattagaataataaaaaga |
130 |
Q |
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| T |
9059244 |
ttaatcaaaatcaaaattccatataaaatactattcataatttacacgtgttagaacaataaaaaga |
9059178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 49840225 - 49840269
Alignment:
| Q |
72 |
aatcaaaatttcccaaaaactactactcataatttatacgtatta |
116 |
Q |
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| T |
49840225 |
aatcaaaatttcataaaaactaatactcataatttatacgcatta |
49840269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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