View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_low_14 (Length: 355)
Name: NF2459_low_14
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 41723432 - 41723757
Alignment:
| Q |
13 |
aaaggcgaaaaaagctgaaaaagatgcagaagaattgagagaatcttctaaacgtgaaggtcaagaacattcttctgatctcaggaaacacaaaactgct |
112 |
Q |
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| T |
41723432 |
aaaggcgaaaaaagctgaaaaagatgcagaagaattgagagaatcttctaaacgtgaaggtcaagaacattcttctgatctcaggaaacacaaaactgct |
41723531 |
T |
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| Q |
113 |
ttcattgagttggtttcaaatcaaagacaccttgaagctgaactcggtcgcgctgttaagcatttggatgctacaaaagaggaacttattgctgtcatgg |
212 |
Q |
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| T |
41723532 |
ttcattgagttggtttcaaatcaaagacaccttgaagctgaactcggtcgcgctgttaagcatttggatgctgcaaaagaggaacttattgctgtcatgg |
41723631 |
T |
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| Q |
213 |
agaacaaagaggagtctgatttgatggttcagaaattaactttggagattgcaaaatttcacaaggatttggaacaaaaagataagattttgtcagcaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41723632 |
agaacaaagaggagtctgatttgatggttcagaaattaactttggagattgcaaaatttcacaaggatttggaacaaaaagataagattttgtcagcaat |
41723731 |
T |
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| Q |
313 |
gttgagaaaatctaaacttgatactg |
338 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41723732 |
gttgagaaaatctaaacttgatactg |
41723757 |
T |
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