View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_low_2 (Length: 538)
Name: NF2459_low_2
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 5 - 522
Target Start/End: Complemental strand, 43928427 - 43927906
Alignment:
| Q |
5 |
gaggagcacagaccgttgcaggttgcgcgcagttagttggtttgtgaagaagttccattccaactctgcaaaaccaaaaatccttttannnnnnnatata |
104 |
Q |
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| T |
43928427 |
gaggatcacagaccgttgcaggttgcgcgcagttagttggtttgtgaagaagttccattccaactctgcaaaaccaaaaatccttttattttt--atata |
43928330 |
T |
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| Q |
105 |
acttttctttaatatgttttgatttcaatccttgttcttgttttacatttccttctggtttttatctccgcttcatatctctctcttggtttggtgctca |
204 |
Q |
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| T |
43928329 |
acttttctttaatatgttttgatttcaatccttcttcttgttttacatttccttctggtttttatctccgcttcatatttctctcttggtttggtgctca |
43928230 |
T |
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| Q |
205 |
ttgttgttaaggtatttcttctcatatatttattttctttcaatccattgtcttctattcaatgcatccaatcccaatatcagaaaatggcaatttggaa |
304 |
Q |
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| T |
43928229 |
ttgttgttaaggtatttcttctcatatatttattttctttcaatccattgtcttctattc-atgcatccaatcccaatatcagaaaatggcaatttggaa |
43928131 |
T |
|
| Q |
305 |
catatatttaatgatttgctta-------tgtatttatttttgttacatcattggttatgcatgtgttttttaattaatcatgaacaacttgttcatatt |
397 |
Q |
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| T |
43928130 |
catatatttaatgattttcttatctttcgtctatttatttttgttaaatcattggttatgcatgtgttttttaattaatcatgaacaacttgttcatatt |
43928031 |
T |
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| Q |
398 |
gttcattgtcnnnnnnngttattgtaacatgcaattctaacttaattcaatgatttaaacccttgcatgcatttgtcttataacatgtgnnnnnnnatta |
497 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43928030 |
gttcattgtcaaaaaaagttattgtaacatgcaattctaacttaattcaatgatttaaacccttgcatgcatttgtcttataacatgtgtttttttatta |
43927931 |
T |
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| Q |
498 |
ttcctaaatgattttggggggtttt |
522 |
Q |
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| T |
43927930 |
ttcctaaatgattttggggggtttt |
43927906 |
T |
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