View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_low_20 (Length: 311)
Name: NF2459_low_20
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 22022908 - 22022630
Alignment:
| Q |
16 |
atgaataactatgcacaagaagatcacaaaatacaacactataaaattgaagggttaatttaattatcatattttttcatcaaattctcatcgtcaatcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22022908 |
atgaataactatgcacaagaagatcacaaaatacaacactataaaattgaagggttaatttaattatcatattttttcatcaaattctcatcttcaatcc |
22022809 |
T |
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| Q |
116 |
tctccatgttcgcttgnnnnnnnggtgaccaaacctctcaagaaatttcatttctcaaaattttcaaccttttccaattccgtttgttcaatatgtgagt |
215 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22022808 |
tctccatgttcacttgaaaaaaaggtgaccaaacctctcaagaaatttcatttctcaaaattttcaaccttttccaattccgtttgttcaatatgtgagt |
22022709 |
T |
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| Q |
216 |
ctagtattttgaagtgcataatatcagtgttgtttctcacttatcagaattgcctccaaattttcaggacatcgaaagg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22022708 |
ctagtattttgaagtgcataatatcagtgttgtttctcacttatcagaattgcctccaaattttcaggacattgaaagg |
22022630 |
T |
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