View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2459_low_33 (Length: 248)

Name: NF2459_low_33
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2459_low_33
NF2459_low_33
[»] chr4 (2 HSPs)
chr4 (7-98)||(56230468-56230559)
chr4 (168-247)||(56230637-56230720)
[»] chr7 (1 HSPs)
chr7 (7-87)||(39188286-39188366)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 56230468 - 56230559
Alignment:
Q  7 gagatgaagggatagggcccattccctcaaggtggaaaggaacttgtcagagtgatcacacaggcttccgttgcaacaggtccactctttta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56230468 gagatgaagggatagggcccattccctcaaggtggaaaggaacttgtcagagtgatcacacaggcttccgttgcaacaggtccactctttta 56230559  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 56230637 - 56230720
Alignment:
Q  168 gtatgctatgtgttctgatc----ggttacacattctttactatcgctaattatagtattgcttgtgtttactatatatctcta 247  Q
    ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  56230637 gtatgctatgtgttctgatcagttagttacacattctttactatcgctaattatagtattgcttgtgtttactatatgtctcta 56230720  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 39188286 - 39188366
Alignment:
Q  7 gagatgaagggatagggcccattccctcaaggtggaaaggaacttgtcagagtgatcacacaggcttccgttgcaacaggt 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39188286 gagatgaagggatagggcccattccctcaaggtggaaaggaacttgtcagaatgatcacacaggcttccgttgcaacaggt 39188366  T

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