View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2459_low_34 (Length: 244)
Name: NF2459_low_34
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39062358 - 39062130
Alignment:
| Q |
1 |
tctgatttttgtagttaattgaactttttctgttaaaattaaaaacaaaaccaaagacataatatgcaataagaatgatcatcacaattggaaacgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39062358 |
tctgatttttgtagttaattgaactttttctgttaaaattaaaaacaaaaccaaagacataatatgcaataagaatgatcatcacaattggaaatgaata |
39062259 |
T |
|
| Q |
101 |
agaatacaaatgttaagattgatgatataagagataaaagcttaacaattgttgtattgagaagaatgagaaagatacaagtgaacaaattggttacaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39062258 |
agaatacaaatgttaagattgatgatataagagataaaagcttaacaattgttgtattgagaagaatgagaaagatacaagtgaacaaattggttacaaa |
39062159 |
T |
|
| Q |
201 |
tagatccaacttctatcatattcatatat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39062158 |
tagatccaacttctatcatattcatatat |
39062130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 36824461 - 36824534
Alignment:
| Q |
134 |
ataaaagcttaacaattgttgtattgagaagaatgagaaagatacaagtgaacaaattggttacaaatagatcc |
207 |
Q |
| |
|
|||||||||||| || |||||||||| || |||||||| |||| |||||||||| || |||| ||||| |||| |
|
|
| T |
36824461 |
ataaaagcttaagaaatgttgtattggaaacaatgagaatgatagaagtgaacaagttagttataaataaatcc |
36824534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University