View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2459_low_4 (Length: 449)

Name: NF2459_low_4
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2459_low_4
NF2459_low_4
[»] chr7 (1 HSPs)
chr7 (17-437)||(44046752-44047172)
[»] chr1 (1 HSPs)
chr1 (119-437)||(39824810-39825131)


Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 44046752 - 44047172
Alignment:
Q  17 aaaggaaaccgggaccgtggttgtggactagaccttccagttccactgccacgaatactgttaatacggaatagagcattgaactttcttaatttttggg 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44046752 aaaggaaaccgggaccgtggttgtggactagacctcccagttccactgccacgaatactgttaatacggaatagagcattgaactttcttaatttttggg 44046851  T
Q  117 caaatgatttgaagaatttgcgtgcaggatgtgtcttcacaagctcttgcttcatagaaacatgatctttctccaaatcattcaacctcattctcattct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44046852 caaatgatttgaagaatttgcgtgcaggatgtgtcttcacaagctcttgcttcatagaaacatgatctttctccaaatcattcaacctcattctcattct 44046951  T
Q  217 tgttacttcaagcttcagctctcgattctctcttcttaccgatgcatagttatctctaggagaaattgctccacttcctataccactccctgatctttga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44046952 tgttacttcaagcttcagctctcgattctctcttcttaccgatgcatagttatctctaggagaaattgctccacttcctataccactccctgatctttga 44047051  T
Q  317 ggaaattgaccatgaataccaccaaacaagatttgattgtgtcctccattcatcgcgtttcgaagccttatttgttcgtagtaaagaacttgtacaccta 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44047052 ggaaattgaccatgaataccaccaaacaagatttgattgtgtcctccattcatcgcgtttcgaagccttatttgttcgtagtaaagaacttgtacaccta 44047151  T
Q  417 tttgaactggtagcctttcat 437  Q
    |||||||||||||||||||||    
T  44047152 tttgaactggtagcctttcat 44047172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 119 - 437
Target Start/End: Complemental strand, 39825131 - 39824810
Alignment:
Q  119 aatgatttgaagaatttgcgtgcaggatgtgtcttcacaagctcttgcttcatagaaacatgatctttctccaaatcattcaacctcattctcattcttg 218  Q
    ||||||||||||| |||    |||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||| | |  ||||||||||||||||    
T  39825131 aatgatttgaagagtttattagcaggatgagacttaacaagctcttgtttcatagaaacatgatctttctccaaatcagtgagtctcattctcattcttg 39825032  T
Q  219 ttacttcaagcttcagctctcgattctctcttcttaccgatgcatagttatctctaggagaaattgctccacttcctataccactccctgatctttgagg 318  Q
    ||||||| || |||||||| || ||||||||||| || |||||||||||||||||||| || |||||||||||||||  |||||| ||||| | ||||||    
T  39825031 ttacttcgagtttcagctcacggttctctcttctaactgatgcatagttatctctaggtgacattgctccacttcctgcaccactgcctgaacgttgagg 39824932  T
Q  319 aaattgaccatgaataccaccaaacaagatttgattgtgtcctcca---ttcatcgcgtttcgaagccttatttgttcgtagtaaagaacttgtacacct 415  Q
     |||||||| | ||  |||||||| |  | |||||||||||||||    ||||| ||||| || || |  ||||||||| |||| |||||||||||  |     
T  39824931 gaattgaccgttaagtccaccaaaaagtagttgattgtgtcctcctccgttcatagcgttgcgtagacggatttgttcgaagtatagaacttgtactgcc 39824832  T
Q  416 atttgaactggtagcctttcat 437  Q
    |||||||||||||| |||||||    
T  39824831 atttgaactggtagtctttcat 39824810  T

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