View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2459_low_42 (Length: 230)

Name: NF2459_low_42
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2459_low_42
NF2459_low_42
[»] chr5 (7 HSPs)
chr5 (19-212)||(15823604-15823797)
chr5 (34-166)||(15813433-15813562)
chr5 (109-187)||(15721058-15721136)
chr5 (36-184)||(15723495-15723640)
chr5 (109-166)||(15717236-15717293)
chr5 (36-166)||(15729716-15729844)
chr5 (141-212)||(15819363-15819434)
[»] chr2 (1 HSPs)
chr2 (34-166)||(33100110-33100239)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 15823604 - 15823797
Alignment:
Q  19 atgggccattcagtaatgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacac 118  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  15823604 atgggccattcaataatgttctagaccaacaaacaatgtcagccattaagatctaccaacaaaatttcaatctccaagttactaatggctacctaaacac 15823703  T
Q  119 cgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaagga 212  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  15823704 tgagacttcacaacaaatcttgttaccacgatgtggtgttcctgatatgaatttcgagtacagcttcaccaatgataagtcgtttcccaaagga 15823797  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 15813433 - 15813562
Alignment:
Q  34 atgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaaca 133  Q
    ||||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||| |    
T  15813433 atgttctagacgaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggta---acctaaacaccgagactttacaaaa 15813529  T
Q  134 aatcttgttaccacgttgtggtgttcctgatat 166  Q
    ||||| |||||| || |||||| ||||||||||    
T  15813530 aatctcgttaccgcgatgtggtattcctgatat 15813562  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 15721058 - 15721136
Alignment:
Q  109 acctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatattaatttcgagtacagcttcac 187  Q
    ||||| || ||||||||| ||||| | ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||    
T  15721058 acctagactccgagactttacaactactcttgttaccaagatgtggtgttcctgatatgaattttgagtacagcttcac 15721136  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 15723495 - 15723640
Alignment:
Q  36 gttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaacaaa 135  Q
    ||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||||||     
T  15723495 gttctagacaaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggtc---acctaaacaccgagactttacaacaat 15723591  T
Q  136 tcttgttaccacgttgtggtgttcctgatattaatttcgagtacagctt 184  Q
    ||| ||| ||| | |||||| |||||||||| || | ||||||| ||||    
T  15723592 tctcgtttccaagatgtggtattcctgatatgaaatacgagtacggctt 15723640  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 15717236 - 15717293
Alignment:
Q  109 acctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatat 166  Q
    ||||| |||||||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  15717236 acctagacaccgagactttacaacaaatcatgttaccacgatgtggtgttcccgatat 15717293  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 15729716 - 15729844
Alignment:
Q  36 gttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcac-aacaa 134  Q
    ||||||||| |  ||||||| || || |||||||  |||||||||  |||||| ||||||||||||| |    |||||||||||||||||| || || ||    
T  15729716 gttctagacgaggaaacaatatccgctattaagacgtaccaacaatttttcaatctccaagttactggtc---acctaaacaccgagactttacaaaaaa 15729812  T
Q  135 atcttgttaccacgttgtggtgttcctgatat 166  Q
    |||| |||||| || |||||| ||||||||||    
T  15729813 atctcgttaccgcgatgtggtattcctgatat 15729844  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 15819363 - 15819434
Alignment:
Q  141 ttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaagga 212  Q
    |||||||| ||||||||||||||||| ||||||  ||||  || |||||||||||| |||| ||| ||||||    
T  15819363 ttaccacgatgtggtgttcctgatatgaatttcacgtacgactccaccaatgatatatcgtatccgaaagga 15819434  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 33100110 - 33100239
Alignment:
Q  34 atgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaaca 133  Q
    ||||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||| |    
T  33100110 atgttctagacgaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggta---acctaaacaccgagactttacaaaa 33100206  T
Q  134 aatcttgttaccacgttgtggtgttcctgatat 166  Q
    ||||| |||||| || |||||| ||||||||||    
T  33100207 aatctcgttaccgcgatgtggtattcctgatat 33100239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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