View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_low_5 (Length: 422)
Name: NF2459_low_5
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 13454022 - 13454404
Alignment:
| Q |
1 |
ctatgtctagtggtctttgtctatgttgggtgtggttcaagattatctccacttcttaacagtaatggagagctttatttatgagagcgaaagacgtgtt |
100 |
Q |
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| T |
13454022 |
ctatgtgtagtggtctttgtctatgttgggtgtggttgaagattatctccacttcttaa-ataaatggagagctttatgtct------------cgtatt |
13454108 |
T |
|
| Q |
101 |
aaggcgtttgatatgtctcatgtttagtgagacttatatttgatggatccaccacactatttaatgtatctttccctctaactaatgtcgccctccattt |
200 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
13454109 |
aaggagtatgatatgtctcatgtttagtgagacttatatttgatggatccaccacactatttaatgtatctttccctctgattaatgtcgccctccattt |
13454208 |
T |
|
| Q |
201 |
atttgagtaatggagaggatattgataccgcgaaatgtgatcgtcaataaaatactcgggtcaatggatcaaaagtgcattcctacatggagagttaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13454209 |
atttgagtaatggagaggatattgataccgcgaaatgtgatcgttgataaaatactcgggtcgatggatcaaaagtgcattcctacatggagagttaaat |
13454308 |
T |
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| Q |
301 |
gaggaggtgtttgttgatcactctttggaatatcaaaatgaagataagaataacgcgcataggttgaaagaaagttttgtatggtcttaaggaggc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
13454309 |
gaggaggtgtttgttgatcactctttggaatatcaaaatgaagataagaataacgcgcataggttggaagaaagttttgtatggtcttaagcaggc |
13454404 |
T |
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