View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2459_low_9 (Length: 379)
Name: NF2459_low_9
Description: NF2459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2459_low_9 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 27254575 - 27254212
Alignment:
| Q |
1 |
ctctatttattcattgtgtagtttagaaattttattatttatattctaatgtgctgaggttatgtcaaattctgtaatatttcaggctattcctagaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254575 |
ctctatttattcattgtgtagtttagaaattttattatttatattctaatgtgctgaggttatgtcaaattctgtaatatttcaggctattcctagaaag |
27254476 |
T |
|
| Q |
101 |
cgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaagttgcacctgattctggtttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27254475 |
cgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaacttgcacctgattctggtttag |
27254376 |
T |
|
| Q |
201 |
gttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgttctttctttactgatatcattttataagatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
27254375 |
gttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgttccttctttactggtatcattttataagatgt |
27254276 |
T |
|
| Q |
301 |
agactttcttagagaagatagagtgaattatttaaactgattcaactttgttccattacaggtg |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254275 |
agactttcttagagaagatagagtgaattatttaaactgattcaactttgttccattacaggtg |
27254212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 49 - 364
Target Start/End: Complemental strand, 27294647 - 27294335
Alignment:
| Q |
49 |
atgtgctgaggttatgtcaaattctgtaatatttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttggg |
148 |
Q |
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|||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27294647 |
atgttctgaggttatgtcaatttctgtaat---tcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctgtaccatttggg |
27294551 |
T |
|
| Q |
149 |
actatggtattgacttctattttggataaagttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaagga |
248 |
Q |
| |
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| |||| ||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27294550 |
agcatggcattgacttctattttgggtaaacttgcaccggattgtggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaagga |
27294451 |
T |
|
| Q |
249 |
aaattccttggtacacatgttctttctttactgatatcattttataagatgtagactttcttagagaagatagagtgaattatttaaactgattcaactt |
348 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27294450 |
caattccttggtacacatgttccttctttactgatatcattttataagatgtagactttcttagagaagatagagtgaattatttaaactgattcaactt |
27294351 |
T |
|
| Q |
349 |
tgttccattacaggtg |
364 |
Q |
| |
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|||||||||| ||||| |
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| T |
27294350 |
tgttccattataggtg |
27294335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 80 - 276
Target Start/End: Original strand, 27405008 - 27405204
Alignment:
| Q |
80 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
179 |
Q |
| |
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||||||||| ||||||| ||||||||| ||||| ||||| |||||||||| |||| |||| | |||| |||||||| | |||| ||| |||| ||| | |
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| T |
27405008 |
tttcaggctgttcctaggaagcgtttcaatgattttgtttcgaagaatggcgttggtttagcttttgcgactatgggaatgacctcttttttagatggac |
27405107 |
T |
|
| Q |
180 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgttctttctt |
276 |
Q |
| |
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|||| ||| || || |||||| ||||| ||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |||| |
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| T |
27405108 |
ctgcagctgggtcagggttaggtgcagttggagaaacaagattaacacctgatttgtctactaaaaggaggattccttggtacacaagttctctctt |
27405204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 276
Target Start/End: Original strand, 27425868 - 27426064
Alignment:
| Q |
80 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
179 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||| |||| |||||| |||||| | ||| |||| | | ||| |
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|
| T |
27425868 |
tttcaggctgttcctagaaagcgtttcaatgatgttgtttcgaagaacggggttggtttagcatttgcacctatgggaatgagttctttaatagatgggc |
27425967 |
T |
|
| Q |
180 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgttctttctt |
276 |
Q |
| |
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|||| | | |||||||||||| ||||||||| |||||||||| ||||| || ||||||||||||| ||||||||||||||| |||||||||| |
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| T |
27425968 |
ctgcagccgggtctggtttaggtgcagttggtgaaacaagattaacgcctgacttgtctactaaaaggaggattccttggtacacaagttctttctt |
27426064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 80 - 261
Target Start/End: Complemental strand, 12901 - 12720
Alignment:
| Q |
80 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||| || ||||||| |||||||| |||||||| | |
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| T |
12901 |
tttcaggctattcctagaaagcgtttctatgatgttgttactaagaatggtgttggtttagcatttgtgagtatggtaatgacttcttttttggatggat |
12802 |
T |
|
| Q |
180 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggta |
261 |
Q |
| |
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| || ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12801 |
ctccagctggttctggtttaggttcagttggtgaagcaagattaacacctgatttatctactaaaaggacaattccttggta |
12720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 13354343 - 13354528
Alignment:
| Q |
80 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
179 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||| |||||| | ||| ||| |||||||| |||| |||| | |
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|
| T |
13354343 |
tttcaggctattcctagaaagcatttctatgatgttgttaagaagaatgggattggtttagcatttgtaagtatcgtaatgacttctgttttagatagac |
13354442 |
T |
|
| Q |
180 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacaca |
265 |
Q |
| |
|
|||||||| |||||| |||| | || ||||| |||||| || |||| ||||| ||||||| ||||| |||||||||||||||| |
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|
| T |
13354443 |
ctgcacctggctctggtctagggttagtcggtgatgcaagagtagcaccagatttgtctactataaggacaattccttggtacaca |
13354528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 258
Target Start/End: Original strand, 6792298 - 6792460
Alignment:
| Q |
96 |
gaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaagttgcacctgattctgg |
195 |
Q |
| |
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|||||| ||| ||||||| |||||| |||||||||||||||||| || || || ||||||| |||||||| ||||||||| | ||||| || || ||| |
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| T |
6792298 |
gaaagcatttttatgatgatgttacaaagaatggggttgctttagcagatgagaatatggtaatgacttctgttttggatagacctgcacgtgcttatgg |
6792397 |
T |
|
| Q |
196 |
tttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttg |
258 |
Q |
| |
|
|||||||| | |||||||||||||||| | |||| |||| ||| ||| ||| | ||||||||| |
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|
| T |
6792398 |
tttaggttttattggtgaagcaagatttaaacctcatttgtcttctataagtacaattccttg |
6792460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 6799525 - 6799637
Alignment:
| Q |
115 |
tgttacgaagaatggggttgctttaccatttgggactatggtattga---cttctattttggataaagttgcacctgattctggtttaggttatgttggt |
211 |
Q |
| |
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|||||| ||||||||||||| |||| || ||||||||||||| ||| ||||| ||||||||| | ||||||| || ||||||||||| | ||||| |
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| T |
6799525 |
tgttacaaagaatggggttggtttagcagatgggactatggtaatgacttcttcttttttggatagacctgcaccttcttatggtttaggttttattggt |
6799624 |
T |
|
| Q |
212 |
gaagcaagattaa |
224 |
Q |
| |
|
||||||||||||| |
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|
| T |
6799625 |
gaagcaagattaa |
6799637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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