View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_high_13 (Length: 255)

Name: NF2460_high_13
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_high_13
NF2460_high_13
[»] chr2 (3 HSPs)
chr2 (32-157)||(23689047-23689172)
chr2 (45-147)||(7752676-7752778)
chr2 (214-255)||(23689228-23689269)
[»] chr8 (2 HSPs)
chr8 (33-144)||(40755847-40755958)
chr8 (33-147)||(19902052-19902166)
[»] chr3 (4 HSPs)
chr3 (33-127)||(23046342-23046436)
chr3 (33-147)||(11177959-11178073)
chr3 (68-126)||(3793665-3793723)
chr3 (48-109)||(3831824-3831885)
[»] chr4 (4 HSPs)
chr4 (33-127)||(16635403-16635497)
chr4 (33-127)||(50882033-50882127)
chr4 (46-124)||(22339540-22339618)
chr4 (100-147)||(11163937-11163984)
[»] scaffold0650 (1 HSPs)
scaffold0650 (33-152)||(6503-6622)
[»] chr1 (3 HSPs)
chr1 (33-124)||(7589224-7589315)
chr1 (33-143)||(24067871-24067981)
chr1 (33-124)||(17951281-17951373)
[»] chr7 (4 HSPs)
chr7 (33-147)||(15932439-15932553)
chr7 (33-147)||(15940781-15940895)
chr7 (33-147)||(7157438-7157552)
chr7 (33-147)||(47922108-47922213)
[»] chr5 (3 HSPs)
chr5 (33-127)||(19183625-19183719)
chr5 (33-147)||(34656859-34656973)
chr5 (33-147)||(20934523-20934637)
[»] scaffold0334 (1 HSPs)
scaffold0334 (33-147)||(15892-16007)
[»] scaffold0453 (1 HSPs)
scaffold0453 (33-147)||(9369-9483)
[»] scaffold0226 (1 HSPs)
scaffold0226 (33-147)||(3301-3415)
[»] scaffold0059 (1 HSPs)
scaffold0059 (33-147)||(39388-39502)
[»] scaffold1661 (1 HSPs)
scaffold1661 (33-147)||(385-500)
[»] scaffold0267 (1 HSPs)
scaffold0267 (48-143)||(8596-8691)
[»] scaffold0029 (2 HSPs)
scaffold0029 (33-147)||(88875-88990)
scaffold0029 (33-147)||(77268-77383)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 23689047 - 23689172
Alignment:
Q  32 caaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatat 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23689047 caaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgatggtattgtgtgtctatttcagatat 23689146  T
Q  132 ttgtcggttaaaggtcgtcgcacgtc 157  Q
    | || |||||||||||||||||||||    
T  23689147 tcgttggttaaaggtcgtcgcacgtc 23689172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 7752676 - 7752778
Alignment:
Q  45 tattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatttgtcggttaaag 144  Q
    ||||||| || ||||| || || |||| ||||| |||||||| || |||| |||||||||||| |||||||||| ||||||| |||||| ||| ||||||    
T  7752676 tattttacctagacttgcacatgttttcatctcaattttataaatttttgtaatgttatgttgatattgtgtgtttatttcaaatatttatcgattaaag 7752775  T
Q  145 gtc 147  Q
    |||    
T  7752776 gtc 7752778  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 23689228 - 23689269
Alignment:
Q  214 gtgagaagtcaggtgggaagtcaaagccagatcaattcttgc 255  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  23689228 gtgagaagtcaggtgggaagtcaaagccagaccaattcttgc 23689269  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 40755847 - 40755958
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  |||    
T  40755847 aaaatgcactattattttagctcgacttacacatttttttatctcgattttatagatttttgcaatgttatgctggtattgtgtgtctatttcaggcatt 40755946  T
Q  133 tgtcggttaaag 144  Q
    ||||||||||||    
T  40755947 tgtcggttaaag 40755958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 19902166 - 19902052
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||   ||| | |||||||||| | ||||||||| || |||||||||||||||||||| |||||||||||||||| ||||    
T  19902166 aaaatgcactattattttgactcatattatacattttttgattttgattttataaatttttgcaatgttatgttggtagtgtgtgtctatttcaggtatt 19902067  T
Q  133 tgtcggttaaaggtc 147  Q
    | |||||||||||||    
T  19902066 tatcggttaaaggtc 19902052  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 23046342 - 23046436
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcag 127  Q
    |||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23046342 aaaatgcaatattattttagctcgacttacacatttttttatctcgattttatagatttttgcaatgttatgttggtattgtgtgtctatttcag 23046436  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 11178073 - 11177959
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||  |||||| |||||||||| | ||||||||| || |||||||||||||||||||| |||||||||||||||| ||||    
T  11178073 aaaatgcactattattttgactcatcttacacattttttgattttgattttataaatttttgcaatgttatgttggtagtgtgtgtctatttcaggtatt 11177974  T
Q  133 tgtcggttaaaggtc 147  Q
    | |||||||||||||    
T  11177973 tatcggttaaaggtc 11177959  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 3793723 - 3793665
Alignment:
Q  68 ttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttca 126  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  3793723 ttttgatcatgattttatagatttttgcaatgttatgttggtattgtgtgtttatttca 3793665  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 3831885 - 3831824
Alignment:
Q  48 tttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggt 109  Q
    |||||||||||||||| |  |||||||| ||||||||||||| |||||||||||||||||||    
T  3831885 tttagctcgacttacagaaattttgatcacgattttatagatttttgcaatgttatgttggt 3831824  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 16635403 - 16635497
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcag 127  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||    
T  16635403 aaaatgcaatattattttagctcgacttacacattttttgatctcgattttatagatttttgcaatgttatgctggtattgcgtgtctatttcag 16635497  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 50882127 - 50882033
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcag 127  Q
    ||||| ||||| ||||||||||||||||| | || |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  50882127 aaaatacactactattttagctcgacttatacatgttttgatctcgattttatagatttttgcaatgttatgctggtattgtgtgtctatttcag 50882033  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 22339618 - 22339540
Alignment:
Q  46 attttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctattt 124  Q
    |||||||||||| ||||| || ||||||||||||||||||||||  |||||| |||||| || | |||| |||||||||    
T  22339618 attttagctcgatttacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtatgtctattt 22339540  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 11163937 - 11163984
Alignment:
Q  100 ttatgttggtattgtgtgtctatttcagatatttgtcggttaaaggtc 147  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||    
T  11163937 ttatgctggtattgtgtgtctatttcaggtatttatcggttaaaggtc 11163984  T

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Target: scaffold0650 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 6503 - 6622
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    |||||||| |||||||||||||| |||||||  |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||    
T  6503 aaaatgcaatattattttagctcaacttacacttttttttatctcgattttatagatttttgcaatgttatgctggtattgtgtgtctagtttagatatt 6602  T
Q  133 tgtcggttaaaggtcgtcgc 152  Q
    |||  ||||||||| |||||    
T  6603 tgtgagttaaaggttgtcgc 6622  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 7589315 - 7589224
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctattt 124  Q
    |||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  7589315 aaaatgcaatattattttagttcgatttacacattttttgatctcgattttatagatttttgcaatgttatgctggtattgtgtgtctattt 7589224  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 24067871 - 24067981
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    |||||||| || | ||||||||||||||||| || ||||||| | ||||||| |||| |||||| ||||||||||||||||||||||||||||||  |||    
T  24067871 aaaatgcattacttttttagctcgacttacacatgttttgattttgattttacagatttttgcattgttatgttggtattgtgtgtctatttcaggcatt 24067970  T
Q  133 tgtcggttaaa 143  Q
    ||||| |||||    
T  24067971 tgtcgattaaa 24067981  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 17951373 - 17951281
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatatttttt-gatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctattt 124  Q
    ||||||||||||||||||  ||||||||||| ||||||| || ||||||||||||||| ||| |||| ||||| |||||||||||||||||||    
T  17951373 aaaatgcactattatttttactcgacttacacatttttttgacctcgattttatagatttttacaatattatgctggtattgtgtgtctattt 17951281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 15932439 - 15932553
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||  |||||| |||||||||| | ||||||||| || |||||||||||||||||||| |||||||||||||||| ||||    
T  15932439 aaaatgcactattattttgactcatcttacacattttttgattttgattttataaatttttgcaatgttatgttggtagtgtgtgtctatttcaggtatt 15932538  T
Q  133 tgtcggttaaaggtc 147  Q
    | |||||||||||||    
T  15932539 tatcggttaaaggtc 15932553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 15940781 - 15940895
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||  |||||| |||||||||| | ||||||||| || |||||||||||||||||||| |||||||||||||||| ||||    
T  15940781 aaaatgcactattattttgactcatcttacacattttttgattttgattttataaatttttgcaatgttatgttggtagtgtgtgtctatttcaggtatt 15940880  T
Q  133 tgtcggttaaaggtc 147  Q
    | |||||||||||||    
T  15940881 tatcggttaaaggtc 15940895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 7157438 - 7157552
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  || | |||||| |||||||||| | ||||||||| || |||||||||||||| ||||||||||||||||||| || ||||    
T  7157438 aaaatgcactattattttgactagtcttacacattttttgattttgattttataaatttttgcaatgttatgctggtattgtgtgtctattttaggtatt 7157537  T
Q  133 tgtcggttaaaggtc 147  Q
    | | |||||||||||    
T  7157538 tattggttaaaggtc 7157552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 47922213 - 47922108
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||| |||||| |||||||||| | ||||||||| || |||||||||||      |||   |||||||||||||| ||||    
T  47922213 aaaatgcactattattttgactcgtcttacacattttttgattttgattttataaatttttgcaatgtt------gta---tgtgtctatttcaggtatt 47922123  T
Q  133 tgtcggttaaaggtc 147  Q
    | |||||||||||||    
T  47922122 tatcggttaaaggtc 47922108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 19183625 - 19183719
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcag 127  Q
    |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||  ||||||||||||||||||||||    
T  19183625 aaaatgcaatattattttagctcgacttacacattttttgatcttgattttatagatttttgcaattttatactggtattgtgtgtctatttcag 19183719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 34656859 - 34656973
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||| |||||| |||||||||| | || |||||| || |||||||||||||| |||||||||||||||||||||| ||||    
T  34656859 aaaatgcactattattttgactcgtcttacacattttttgattttgaatttataaatttttgcaatgttatgctggtattgtgtgtctatttcaggtatt 34656958  T
Q  133 tgtcggttaaaggtc 147  Q
    | |||||||||||||    
T  34656959 tatcggttaaaggtc 34656973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 20934637 - 20934523
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||  |||||| |||||||||| | ||||||||| || ||||||||||||||| |||| |||||||||||||||| ||||    
T  20934637 aaaatgcactattattttgactcatcttacacattttttgattttgattttataaatttttgcaatgttatgtcggtagtgtgtgtctatttcaggtatt 20934538  T
Q  133 tgtcggttaaaggtc 147  Q
    | |||||||||||||    
T  20934537 tatcggttaaaggtc 20934523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 15892 - 16007
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttga-tctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatat 131  Q
    ||||||||||||||||||  |||| |||||| ||||||| | | | ||||||||| || |||||||||||||| ||||||||||||||||||||| ||||    
T  15892 aaaatgcactattattttgactcgtcttacacatttttttaattttgattttataaatttttgcaatgttatgctggtattgtgtgtctatttcaaatat 15991  T
Q  132 ttgtcggttaaaggtc 147  Q
    || |||||||||||||    
T  15992 ttatcggttaaaggtc 16007  T

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Target: scaffold0453 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 9369 - 9483
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||| |||||| |||||||||| | ||||||||| || |||||||||||||| |||||||||||||||||||| | ||||    
T  9369 aaaatgcactattattttgactcgtcttacacattttttgattttgattttataaatttttgcaatgttatgctggtattgtgtgtctatttcgggtatt 9468  T
Q  133 tgtcggttaaaggtc 147  Q
    | | ||||| |||||    
T  9469 tattggttataggtc 9483  T

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Target: scaffold0226 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 3301 - 3415
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||| |||||| |||||| ||| | ||| ||||| || |||||||||||||| |||||||||||||||||||||| ||||    
T  3301 aaaatgcactattattttgactcgtcttacacatttttagatttagatgttataaatttttgcaatgttatgctggtattgtgtgtctatttcaggtatt 3400  T
Q  133 tgtcggttaaaggtc 147  Q
    | || ||||||||||    
T  3401 tatcagttaaaggtc 3415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 39502 - 39388
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatt 132  Q
    ||||||||||||||||||  |||| |||||| |||||| ||| | ||||||||| || |||||||||||||| |||||||||||||||||||||| ||||    
T  39502 aaaatgcactattattttgactcgtcttacacatttttagatttagattttataaatttttgcaatgttatgctggtattgtgtgtctatttcaggtatt 39403  T
Q  133 tgtcggttaaaggtc 147  Q
    | || ||| ||||||    
T  39402 tatctgtttaaggtc 39388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1661 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1661
Description:

Target: scaffold1661; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 500 - 385
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatatttttt-gatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatat 131  Q
    ||||||||||||||||||  |||  |||||| ||||||| ||| | ||||||||| || ||||||||||||| |||||| |||||||||||||||| |||    
T  500 aaaatgcactattattttgactcatcttacacatttttttgattttgattttataaatttttgcaatgttattttggtagtgtgtgtctatttcaggtat 401  T
Q  132 ttgtcggttaaaggtc 147  Q
    || |||||||||||||    
T  400 ttatcggttaaaggtc 385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 8691 - 8596
Alignment:
Q  48 tttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatatttgtcggttaaa 143  Q
    |||||||||||||||| |  |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||  ||| ||||| |||||    
T  8691 tttagctcgacttacagaagttttgatcacgattttatagatttttgcaatgttatgctggtattgtgtgtctatttcacgtatatgtcgattaaa 8596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 88990 - 88875
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatatttttt-gatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatat 131  Q
    ||||||||||||||||||  |||  |||||| ||||||| ||| | ||||||||| || |||||||||||||| ||||| |||||||||||||||| |||    
T  88990 aaaatgcactattattttgactcatcttacacatttttttgattttgattttataaatttttgcaatgttatgctggtagtgtgtgtctatttcaggtat 88891  T
Q  132 ttgtcggttaaaggtc 147  Q
    || |||||||||||||    
T  88890 ttatcggttaaaggtc 88875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 77383 - 77268
Alignment:
Q  33 aaaatgcactattattttagctcgacttacatatttttt-gatctcgattttatagatatttgcaatgttatgttggtattgtgtgtctatttcagatat 131  Q
    ||||||||||||||||||  |||  |||||| ||||||| ||| | |||| |||| || |||||||||||||| ||||| |||||||||||||||| |||    
T  77383 aaaatgcactattattttgactcatcttacacatttttttgattttgattctataaatttttgcaatgttatgctggtagtgtgtgtctatttcaggtat 77284  T
Q  132 ttgtcggttaaaggtc 147  Q
    || || ||||||||||    
T  77283 ttatcagttaaaggtc 77268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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