View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_high_14 (Length: 236)

Name: NF2460_high_14
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_high_14
NF2460_high_14
[»] chr3 (16 HSPs)
chr3 (9-175)||(52585536-52585702)
chr3 (9-179)||(53581328-53581498)
chr3 (15-175)||(20685459-20685619)
chr3 (9-174)||(39452972-39453135)
chr3 (46-174)||(3856598-3856726)
chr3 (24-167)||(17058732-17058875)
chr3 (9-143)||(8726924-8727057)
chr3 (9-143)||(9078811-9078944)
chr3 (24-161)||(42595579-42595716)
chr3 (97-168)||(26739581-26739652)
chr3 (46-174)||(43640528-43640656)
chr3 (97-168)||(26716368-26716439)
chr3 (75-171)||(28625468-28625564)
chr3 (11-72)||(25537476-25537537)
chr3 (24-89)||(13503320-13503385)
chr3 (122-179)||(45779858-45779915)
[»] chr4 (9 HSPs)
chr4 (9-175)||(48026008-48026174)
chr4 (16-125)||(39774909-39775018)
chr4 (9-167)||(18570249-18570406)
chr4 (24-171)||(45421600-45421747)
chr4 (26-157)||(21485527-21485658)
chr4 (68-167)||(38836809-38836908)
chr4 (46-161)||(48213524-48213639)
chr4 (46-179)||(8943403-8943536)
chr4 (46-178)||(32663721-32663853)
[»] chr7 (13 HSPs)
chr7 (9-169)||(26754920-26755080)
chr7 (9-167)||(13596960-13597118)
chr7 (9-171)||(22911215-22911377)
chr7 (9-175)||(15026401-15026563)
chr7 (9-171)||(23039969-23040132)
chr7 (9-175)||(48859484-48859650)
chr7 (9-141)||(23586236-23586369)
chr7 (10-167)||(26036725-26036883)
chr7 (116-168)||(3672013-3672065)
chr7 (46-146)||(23834865-23834965)
chr7 (100-160)||(47295177-47295237)
chr7 (24-146)||(21505015-21505137)
chr7 (108-160)||(47300340-47300392)
[»] chr8 (10 HSPs)
chr8 (9-175)||(10260471-10260636)
chr8 (13-175)||(17834288-17834450)
chr8 (16-173)||(8783609-8783766)
chr8 (9-152)||(8871790-8871932)
chr8 (10-160)||(9604877-9605026)
chr8 (80-175)||(33821276-33821371)
chr8 (46-179)||(26381255-26381388)
chr8 (12-89)||(13523143-13523220)
chr8 (120-168)||(96229-96277)
chr8 (131-167)||(6394504-6394540)
[»] chr6 (8 HSPs)
chr6 (9-175)||(15610151-15610317)
chr6 (9-142)||(5827615-5827748)
chr6 (10-142)||(3627377-3627509)
chr6 (24-168)||(7072512-7072656)
chr6 (100-161)||(4084601-4084662)
chr6 (46-179)||(19110275-19110408)
chr6 (130-168)||(7644930-7644968)
chr6 (24-89)||(24177710-24177775)
[»] chr5 (5 HSPs)
chr5 (10-175)||(17237348-17237513)
chr5 (9-175)||(32295769-32295934)
chr5 (9-175)||(20174603-20174769)
chr5 (46-168)||(14724203-14724324)
chr5 (112-168)||(4852149-4852205)
[»] chr2 (18 HSPs)
chr2 (9-175)||(18579424-18579594)
chr2 (9-160)||(5849175-5849325)
chr2 (9-147)||(15745492-15745633)
chr2 (9-177)||(36098842-36099008)
chr2 (24-171)||(3981698-3981845)
chr2 (9-62)||(33170921-33170974)
chr2 (46-168)||(19933847-19933969)
chr2 (46-171)||(10420953-10421078)
chr2 (9-93)||(19051617-19051701)
chr2 (46-174)||(26510005-26510133)
chr2 (97-168)||(6742874-6742945)
chr2 (114-160)||(18076802-18076848)
chr2 (100-161)||(15521370-15521431)
chr2 (12-168)||(26370455-26370611)
chr2 (13-85)||(30355294-30355365)
chr2 (24-146)||(22849524-22849646)
chr2 (122-179)||(13911575-13911632)
chr2 (122-179)||(43680663-43680720)
[»] chr1 (10 HSPs)
chr1 (9-171)||(42132079-42132240)
chr1 (9-133)||(44022230-44022354)
chr1 (12-179)||(30939509-30939676)
chr1 (63-167)||(26056348-26056452)
chr1 (24-168)||(47142682-47142826)
chr1 (9-148)||(32924093-32924232)
chr1 (46-178)||(20491531-20491663)
chr1 (130-168)||(22069947-22069985)
chr1 (125-161)||(39637067-39637103)
chr1 (125-161)||(39645735-39645771)
[»] scaffold0913 (1 HSPs)
scaffold0913 (9-175)||(3585-3751)
[»] scaffold0898 (1 HSPs)
scaffold0898 (9-175)||(1850-2016)
[»] scaffold0044 (1 HSPs)
scaffold0044 (24-161)||(11032-11169)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 52585702 - 52585536
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||     
T  52585702 gaacaatattatgtcaactctagtgttgagttcgtgatgagacaagcaaatgaggcagcccatagattaactaaggcggccacatcctcagctagtttcc 52585603  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  52585602 agattttggtagaaatatcggattgtattgaacacattttaagtaatgaaatgatataagcttcttt 52585536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 53581328 - 53581498
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||||||||||||||| |||||||  | |||||||||||||||||||||||||||||||||| ||||| ||||||||  || ||||||||||    
T  53581328 gaacaatattatgtcaactctagttttgagtttgtaaggagacaagcaaatgaggcagcccatagattagataaggaggccacattttctactagtttct 53581427  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttttctt 179  Q
    ||||||||||| || || || ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  53581428 agattttggtaaaattatcatattgtattgaacacattttaagtgatgaaatgacataagcttcttttctt 53581498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 20685459 - 20685619
Alignment:
Q  15 tattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattt 114  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||| |||||||| | ||||    
T  20685459 tattatgtcaactctagtgttgagtttgtgaggagacaagcaaatgagacagcccatagattagctaaggagaccacatcttcagctagtttccaaattt 20685558  T
Q  115 tggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    || ||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  20685559 tgatagaaataccagattgtattgaacacattttaaatatcgaaatgatataagcttcttt 20685619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 39453135 - 39452972
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||||||||||||| ||| || ||  ||||||||||| |||||||| ||| ||||||||||||||   |||| | ||||| | |||  ||      
T  39453135 gaacaatattatgtcaactctaatgtggactttgtgaggagacaaacaaatgagtcagtccatagattagctacaacggctatatcctaagctaactttc 39453036  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttctt 174  Q
    ||||||||||| ||||||  |||||||||| ||||||||||| |||| |||||||||||| |||||    
T  39453035 agattttggtaaaaatac--gattgtattggacacattttaaataataaaatgatataagtttctt 39452972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 3856726 - 3856598
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    |||||||||||| |||| || | |||||||||| ||| |||||||||| |||| ||||||||   ||||||||| |||||    ||| ||||||||||||    
T  3856726 ggagacaagcaagtgagacaactcatagattagttaatgcggccacattctcagctagtttcctaattttggtataaatattcaattatattgaacacat 3856627  T
Q  146 tttaagtaatgaaatgatataagcttctt 174  Q
    ||||| |||||||||| ||||| ||||||    
T  3856626 tttaaataatgaaatgttataaacttctt 3856598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 17058875 - 17058732
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaa 123  Q
    |||||||||||||||||  || ||||||||||||||||||  || |||   ||||| |||||| ||||||  ||| |||||||| | ||||||||         
T  17058875 aactctagtgttgagtttgtgcggagacaagcaaatgaggttgctcatgagttagcaaaggcgaccacattgtcagctagtttccaaattttggtcatgc 17058776  T
Q  124 taccagattgtattgaacacattttaagtaatgaaatgatataa 167  Q
     |||| |||||||||||||||||||||||||||||||| |||||    
T  17058775 caccaaattgtattgaacacattttaagtaatgaaatgctataa 17058732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 8726924 - 8727057
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||| ||| ||||||||||| | |||||||| ||||||||| ||  ||||||| ||  | | ||||||| |||||||| |||||| |||| ||||||      
T  8726924 gaacagtatcatgtcaactcttgagttgagttgatgaggagaaaaa-aaatgagacaatcgaaagattaggtaaggcggacacatcttcaaatagttttc 8727022  T
Q  109 agattttggtagaaataccagattgtattgaacac 143  Q
    ||||||| ||||||| |||||||||||||||||||    
T  8727023 agatttttgtagaaaaaccagattgtattgaacac 8727057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 9078811 - 9078944
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||| ||| ||||||||||| | |||||||| ||||||||| ||  ||||||| ||  | | ||||||| |||||||| |||||| |||| ||||||      
T  9078811 gaacagtatcatgtcaactcttgagttgagttgatgaggagaaaaa-aaatgagacaatcgaaagattaggtaaggcggacacatcttcaaatagttttc 9078909  T
Q  109 agattttggtagaaataccagattgtattgaacac 143  Q
    ||||||| ||||||| |||||||||||||||||||    
T  9078910 agatttttgtagaaaaaccagattgtattgaacac 9078944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 42595716 - 42595579
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaa 123  Q
    ||||| ||||| |||||  ||||||||||||||||||| ||  | |||| |||| |||||||||||||||  |||  ||||||  ||||||| ||  |||    
T  42595716 aactcaagtgtagagtttgtgaggagacaagcaaatgaagctcctcataaattaactaaggcggccacattatcagttagttttcagatttttgttaaaa 42595617  T
Q  124 taccagattgtattgaacacattttaagtaatgaaatg 161  Q
    |||| || ||||||||| ||||||||||||| ||||||    
T  42595616 taccggaatgtattgaagacattttaagtaacgaaatg 42595579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 26739652 - 26739581
Alignment:
Q  97 caactagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataag 168  Q
    |||||||||| ||||||||||| ||||||||| ||| |||| |||||||||| | |||||||||||||||||    
T  26739652 caactagtttgtagattttggttgaaataccaaattatattaaacacattttcattaatgaaatgatataag 26739581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 43640528 - 43640656
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    |||||||||||||||||| ||| |||   |||||||||||||||||||  ||| |||||||  || | ||  | | |||||| |||||||||||||||||    
T  43640528 ggagacaagcaaatgagggagctcatgctttagctaaggcggccacattgtcagctagtttacagttattatttgtaatacctgattgtattgaacacat 43640627  T
Q  146 tttaagtaatgaaatgatataagcttctt 174  Q
     || | |||||||||| | ||||||||||    
T  43640628 attgattaatgaaatgttttaagcttctt 43640656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 26716439 - 26716368
Alignment:
Q  97 caactagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataag 168  Q
    |||||||||| ||||||||||| ||||||||| ||| |||| |||||||||| | |||||||||| ||||||    
T  26716439 caactagtttgtagattttggttgaaataccaaattatattaaacacattttgattaatgaaatgctataag 26716368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 28625564 - 28625468
Alignment:
Q  75 ttagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagctt 171  Q
    |||||||||||||||||||    | |||||||| || || ||||||| || ||| ||||||||||||||||||| |||||| |||||  ||||||||    
T  28625564 ttagctaaggcggccacattagaagctagtttccaggttctggtagagatgccatattgtattgaacacattttgagtaataaaatgcaataagctt 28625468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 25537537 - 25537476
Alignment:
Q  11 acaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccata 72  Q
    ||||| |||| | |||||||||||||||||  || |||||||||||||||||||||| ||||    
T  25537537 acaattttatttaaactctagtgttgagtttgtgcggagacaagcaaatgaggcagctcata 25537476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 13503320 - 13503385
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggcc 89  Q
    |||||| ||||||||||  |  |||| |||||||||||||  |||||||| |||||||||||||||    
T  13503320 aactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggcc 13503385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 45779858 - 45779915
Alignment:
Q  122 aataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttttctt 179  Q
    |||||| ||||||||||||||||| || | |||||||||| | |||||||||| ||||    
T  45779858 aatacctgattgtattgaacacatattgattaatgaaatgttttaagcttcttctctt 45779915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 48026174 - 48026008
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| |||| || ||||||||||| |    
T  48026174 gaacaatattatgtcaactctagtgttgagtttacgaggagacaagcaaatgaagcagcccatagattagctaaggcgaccacgtcttcaactagttttt 48026075  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48026074 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaattatataagcttcttt 48026008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 39774909 - 39775018
Alignment:
Q  16 attatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagatttt 115  Q
    |||||||||||| ||||||||||||  ||||||||||| ||||| |||||  |||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  39774909 attatgtcaactttagtgttgagtttgtgaggagacaaacaaataaggcaatccatagattaactaaggcggccacatcctcaactaatttttagatttt 39775008  T
Q  116 ggtagaaata 125  Q
    | | ||||||    
T  39775009 gattgaaata 39775018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 18570406 - 18570249
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||| |||||||||||||||||||  |||||||||||| ||| ||| || |  || ||||||||||| || |||||| | | | ||||||||    
T  18570406 gaacaatattatatcaactctagtgttgagtttgtgaggagacaag-aaacgagacaacttatggattagctaagacgaccacattcacgattagtttct 18570308  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataa 167  Q
    | |||| | ||||||||| | |||||||||||||||||| || |||||||||| |||||    
T  18570307 aaatttggatagaaatactatattgtattgaacacatttaaaataatgaaatgttataa 18570249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 45421600 - 45421747
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaa 123  Q
    ||||||||||| ||||| ||  | |||||||| |||||||  ||||||  |||||||||||||||| |||| |||  ||||||| ||||| ||||  | |    
T  45421600 aactctagtgtggagtttattcgaagacaagcgaatgaggttgcccatgaattagctaaggcggcctcatcatcagttagtttccagattctggttaata 45421699  T
Q  124 taccagattgtattgaacacattttaagtaatgaaatgatataagctt 171  Q
    ||||| | ||||||||||||||||| | |||||||||| |||||||||    
T  45421700 taccataatgtattgaacacattttgattaatgaaatgttataagctt 45421747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 21485658 - 21485527
Alignment:
Q  26 ctctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaata 125  Q
    ||||||||| ||||| || ||| |||||| ||||||||  | ||||  |||||||||||||| |||||  ||| |||||||    |||||| | || |||    
T  21485658 ctctagtgtagagtttataaggtgacaagtaaatgaggttgtccatgaattagctaaggcggtcacattatcagctagttttcgaattttgattgacata 21485559  T
Q  126 ccagattgtattgaacacattttaagtaatga 157  Q
    ||| ||||||||||||| ||||||||||||||    
T  21485558 ccaaattgtattgaacatattttaagtaatga 21485527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 38836809 - 38836908
Alignment:
Q  68 ccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataa 167  Q
    ||||| ||||| |||||||||| |||  ||| ||| |||||||||||||||  | |||| ||| ||||||||||||||||| | |||||||||| |||||    
T  38836809 ccataaattagttaaggcggcctcataatcagctaatttctagattttggttaatatactagaatgtattgaacacattttgattaatgaaatgttataa 38836908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 48213524 - 48213639
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    |||| |||||||||||||  || ||||| |||||||| ||||||  ||| ||| |||| | | | |||||||||||||||||  ||||||||||||||||    
T  48213524 ggaggcaagcaaatgaggttgctcatagtttagctaaagcggccttatcatcagctagctcccaaattttggtagaaatacctcattgtattgaacacat 48213623  T
Q  146 tttaagtaatgaaatg 161  Q
    | ||  ||||||||||    
T  48213624 tctatttaatgaaatg 48213639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 8943536 - 8943403
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    ||||||||||||||||| |||| |||   |||||||||||||| ||||  ||| |||||||| |  | ||  | | |||||| |||||||||||||||||    
T  8943536 ggagacaagcaaatgagacagctcatgctttagctaaggcggctacattgtcagctagtttccaattattatttgtaatacctgattgtattgaacacat 8943437  T
Q  146 tttaagtaatgaaatgatataagcttcttttctt 179  Q
     || | |||||||||| | |||||||||| ||||    
T  8943436 attgattaatgaaatgttttaagcttcttctctt 8943403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 32663721 - 32663853
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    |||||||||||||||||   || |||| |||||||||| |||||  ||  ||||||||| |  || || |  | ||||||||||||||||||||| | |     
T  32663721 ggagacaagcaaatgagattgctcataaattagctaagacggccttattgtcaactagtcttcaggttctatttgaaataccagattgtattgaaaatac 32663820  T
Q  146 tttaagtaatgaaatgatataagcttcttttct 178  Q
    ||| | ||||||||||||||||| || ||||||    
T  32663821 tttgattaatgaaatgatataagtttgttttct 32663853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 26754920 - 26755080
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  26754920 gaacaatattatgtcaactatagtgttgagtttgtgaggagacaagcaaatgaggcagcccatagattatctaaggcggccacatcctcaactagttttt 26755019  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagc 169  Q
    |||||||| |||||||| | ||||||||||||||||||||||||| | |||||||||||||    
T  26755020 agattttgatagaaatatcggattgtattgaacacattttaagtagtaaaatgatataagc 26755080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 13596960 - 13597118
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  13596960 gaacaatactatgtcaactctagtgttgagtttgtgaggagacaagcaaatgaggcagcccctagattagctaaggcggccatatcctcaactagtttct 13597059  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataa 167  Q
    |||||||| ||||||||||| ||| |||||||||||||||||  ||||||||| |||||    
T  13597060 agattttgttagaaataccaaattatattgaacacattttaatcaatgaaatggtataa 13597118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 22911215 - 22911377
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||||||||||||||| |||||||  | ||||||||||||||||||| || ||||||||||||||||| ||||||||| ||| ||||||||     
T  22911215 gaacaatattatgtcaactctagttttgagtttgtaaggagacaagcaaatgagggaggccatagattagctaaggaggccacatcttcatctagtttcc 22911314  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagctt 171  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||    
T  22911315 agattttggcagaaatatcagattatattgaacacattttaagtaataaaatgatataagctt 22911377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 15026401 - 15026563
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||||||||||||||||||||||| ||| ||  | |||||||||||||    |||||||||||||||||||||||  |||||||| ||| ||||||||     
T  15026401 gaacaatattatgtcaactctagtgctgactttgtaaggagacaagcaa----ggcagcccatagattagctaaggaagccacatcttcagctagtttcc 15026496  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15026497 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagtttcttt 15026563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 23040132 - 23039969
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagac-aagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttc 107  Q
    ||||||||||||||||||||||||||||||||  | ||||||| |||||||||||||||||||||||||| |||||| ||||||||| | | | |||||     
T  23040132 gaacaatattatgtcaactctagtgttgagtttgtaaggagaccaagcaaatgaggcagcccatagattaactaaggaggccacatctttagcaagtttt 23040033  T
Q  108 tagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagctt 171  Q
     |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  23040032 cagattttggtagaaataccatattatattaaacacattttaagtaatgaaatgatataagctt 23039969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 48859484 - 48859650
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||| |||||||||||||||||||  ||| ||||||||||||| |||||| | ||||| ||||||||| |||| ||||||||| ||||||      
T  48859484 gaacaatattatatcaactctagtgttgagtttgtgaagagacaagcaaataaggcagtctatagactagctaaggtggccgcatcctcaattagttttc 48859583  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  48859584 agattttggtagaaatacccgattgtattgaacacattttaagtaataaaatgatacaagtttcttt 48859650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 23586236 - 23586369
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggc-ggccacatcctcaactagtttc 107  Q
    ||||||||||||||||||  || |||| ||||  ||||||||||| |||||||| || ||||||||||| | ||||| | ||||||||||||||||||||    
T  23586236 gaacaatattatgtcaaccttaatgttcagtttgtgaggagacaaacaaatgagacaacccatagattatccaaggctgaccacatcctcaactagtttc 23586335  T
Q  108 tagattttggtagaaataccagattgtattgaac 141  Q
     | ||||| |||| ||||| | |||||| |||||    
T  23586336 caaattttagtagcaatactaaattgtagtgaac 23586369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 26036883 - 26036725
Alignment:
Q  10 aacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttcta 109  Q
    ||||||||||||| ||||  ||||||||||| || || || ||| |||||||| |||| ||||| ||| |||  ||| |||| || || ||||||||| |    
T  26036883 aacaatattatgttaacttcagtgttgagtttataagaaggcaaacaaatgagacagctcatagtttaactatagcgaccacttcttccactagtttcca 26036784  T
Q  110 gattttggtagaaatacc-agattgtattgaacacattttaagtaatgaaatgatataa 167  Q
     || ||| |||||||||| | |||||||||| |||||| | | ||||||||||| ||||    
T  26036783 aatattgatagaaataccaaaattgtattgagcacattatcattaatgaaatgaaataa 26036725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 3672065 - 3672013
Alignment:
Q  116 ggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataag 168  Q
    |||||||||| ||||||||||| |||| ||||| | |||||||||||||||||    
T  3672065 ggtagaaatatcagattgtattaaacatattttgattaatgaaatgatataag 3672013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 23834865 - 23834965
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    |||||||||||||||||||||| || |  |||| ||||||||| ||||  |||||||||||| |||| ||    | |||||| ||||||||||| |||||    
T  23834865 ggagacaagcaaatgaggcagctcacattttagttaaggcggctacattgtcaactagtttccagatattatatgtaatacctgattgtattgagcacat 23834964  T
Q  146 t 146  Q
    |    
T  23834965 t 23834965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 47295177 - 47295237
Alignment:
Q  100 ctagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaat 160  Q
    ||||||| |||||||||||  |||||||| ||||||||||| |||| |||| |||||||||    
T  47295177 ctagtttttagattttggttaaaataccaaattgtattgaatacatcttaattaatgaaat 47295237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 21505015 - 21505137
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaa 123  Q
    |||||| ||||||||||  |  |||| |||||||||||||  |||||||| |||||||||||||||  ||| ||| |||| | | | || |||||    |    
T  21505015 aactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctagctcccaaatattggttacca 21505114  T
Q  124 taccagattgtattgaacacatt 146  Q
    ||||| |||||||||||||||||    
T  21505115 taccaaattgtattgaacacatt 21505137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 47300340 - 47300392
Alignment:
Q  108 tagattttggtagaaataccagattgtattgaacacattttaagtaatgaaat 160  Q
    ||||||||||| ||||||| | |||||||||||||| |||| | |||||||||    
T  47300340 tagattttggttgaaatactaaattgtattgaacacgttttgattaatgaaat 47300392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 10260471 - 10260636
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||| |||||||||||||||||||||||  ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||  ||||||||||    
T  10260471 gaacaatactatgtcaactctagtgttgagtttctgaagagacaagcaaatgaggtagcccatagatttgctaaggcggccacatccttgactagtttct 10260570  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10260571 agattttggtaaaaataccagattgtattgaacac-ttttaagtaatgaaatgatataagtttcttt 10260636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 17834450 - 17834288
Alignment:
Q  13 aatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagat 112  Q
    |||| |||||||||||||||||||||||  ||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||    
T  17834450 aatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgagacaacccatagattagctaaggcggccacatcctcagctagtttccagat 17834351  T
Q  113 tttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17834350 tttgatagaaatatcagaatgtattgaacacattttaagtaatgaaatgatataagcttcttt 17834288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 8783609 - 8783766
Alignment:
Q  16 attatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagatttt 115  Q
    |||||||  ||||||||||||||||  ||| |||||||| ||| ||||||||||||||||||||||||||| |||||||  ||||| |||||||||||||    
T  8783609 attatgttgactctagtgttgagtttgtgacgagacaaggaaacgaggcagcccatagattagctaaggcgaccacatctccaacttgtttctagatttt 8783708  T
Q  116 ggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttct 173  Q
    ||||||||||| |||||||| ||| ||| |||||||||||||||| ||||||||||||    
T  8783709 ggtagaaatactagattgtagtgagcacgttttaagtaatgaaataatataagcttct 8783766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 8871932 - 8871790
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||||| |||| ||||||||||||  |||||| |||||||||||||| |||||||| ||||||||||||| ||||||| ||| || |||||     
T  8871932 gaacaatattatgttaactttagtgttgagtttgtgaggatacaagcaaatgaggtagcccataaattagctaaggcgaccacatcatcagcttgtttca 8871833  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagt 152  Q
    |||||||||||||||||| | | |  ||||||||||||||||||    
T  8871832 agattttggtagaaatac-atactacattgaacacattttaagt 8871790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 9605026 - 9604877
Alignment:
Q  10 aacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttcta 109  Q
    ||||||||||| |||||||||||||||||||  ||||||||||| || ||||  || |||||| ||||| |||||||   |||| ||||  ||||||  |    
T  9605026 aacaatattatatcaactctagtgttgagtttgtgaggagacaaacagatgatcca-cccataaattagttaaggcgatgacattctcagttagttttca 9604928  T
Q  110 gattttggtagaaataccagattgtattgaacacattttaagtaatgaaat 160  Q
    ||||||| |||||| ||| ||| |||  ||||| |||||||||||||||||    
T  9604927 gattttgatagaaacaccggatcgtaacgaacatattttaagtaatgaaat 9604877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 33821371 - 33821276
Alignment:
Q  80 taaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    ||||| || |||||||| ||||| ||| ||||||||| || ||||| | ||||  |||| ||| |||||||||||||||||||||||| |||||||    
T  33821371 taaggtggtcacatccttaactattttttagattttgataaaaatatcggattccattgcacatattttaagtaatgaaatgatataaacttcttt 33821276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 26381388 - 26381255
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    |||||||||||||||||||||| |||   ||| |||||||||| ||||  ||| |||||||| || | ||  | | |||||| |||||||||||||| ||    
T  26381388 ggagacaagcaaatgaggcagctcatgctttatctaaggcggctacattgtcagctagtttccagttattatttgtaatacctgattgtattgaacatat 26381289  T
Q  146 tttaagtaatgaaatgatataagcttcttttctt 179  Q
     || | |||||||||  | |||||||||| ||||    
T  26381288 attgattaatgaaattctttaagcttcttctctt 26381255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 13523220 - 13523143
Alignment:
Q  12 caatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggcc 89  Q
    |||| |||||| |||||| ||||||||||  |  |||| ||||||||||| |  |||||||| |||||||||||||||    
T  13523220 caattttatgtaaactcttgtgttgagtttgtacggaggcaagcaaatgatgttgcccatagtttagctaaggcggcc 13523143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 96229 - 96277
Alignment:
Q  120 gaaataccagattgtattgaacacattttaagtaatgaaatgatataag 168  Q
    |||||| |||||||||||||||||| ||| | |||||||||| ||||||    
T  96229 gaaatatcagattgtattgaacacactttgattaatgaaatgttataag 96277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 6394504 - 6394540
Alignment:
Q  131 ttgtattgaacacattttaagtaatgaaatgatataa 167  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  6394504 ttgtattgaacacattttaattaatgaagtgatataa 6394540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 15610151 - 15610317
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||| |||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||     
T  15610151 gaacaatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggtagcccatagattagctaagacgaccacatcctcaactagtatcc 15610250  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| |||||||    
T  15610251 agattttgatagaaacactagattgtattgaacacattttaagtaatgaaatgatataaacttcttt 15610317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 5827615 - 5827748
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||| |||| ||||||||||| |||||| || ||| ||||||||     
T  5827615 gaacaatattatatcaactctagtgttgagtttgtaaggagacaagcaaatgaggcagctcatacattagctaaggaggccacgtcttcagctagtttcc 5827714  T
Q  109 agattttggtagaaataccagattgtattgaaca 142  Q
    ||||||||||||||||| ||||||||||||||||    
T  5827715 agattttggtagaaatatcagattgtattgaaca 5827748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 3627377 - 3627509
Alignment:
Q  10 aacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttcta 109  Q
    ||||||||| ||| ||||| | |||||||||  | ||||  |||| |||||||| || |||||| |||||||||| ||||||||| ||| ||||||| ||    
T  3627377 aacaatattttgttaactccaatgttgagtttgtaaggaagcaagaaaatgaggtagaccatagtttagctaaggtggccacatcttcagctagttttta 3627476  T
Q  110 gattttggtagaaataccagattgtattgaaca 142  Q
     || ||||| ||||||||| |||||||||||||    
T  3627477 aatattggttgaaataccaaattgtattgaaca 3627509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 7072656 - 7072512
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaa 123  Q
    |||||||||||||||||  ||  ||||||| |||||||||  || |||   ||||| |||||| ||||||  ||| ||| |||| ||||||||||   |     
T  7072656 aactctagtgttgagtttgtgcagagacaatcaaatgaggttgctcatgagttagcaaaggcgaccacattgtcagctaatttccagattttggtcatac 7072557  T
Q  124 taccagattgtattgaacacattttaagtaatgaaatgatataag 168  Q
     |||| |||||||| |||||||||||| |||||||||| ||||||    
T  7072556 caccaaattgtattaaacacattttaaataatgaaatgttataag 7072512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 4084601 - 4084662
Alignment:
Q  100 ctagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatg 161  Q
    |||||||| | || ||||||||||||||| ||||||||||||||||||| |  |||||||||    
T  4084601 ctagtttccaaatattggtagaaataccatattgtattgaacacattttgatgaatgaaatg 4084662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 19110408 - 19110275
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    |||||||||||||||| ||||| |||   |||||||||||||| ||||  ||| ||||||||  | | ||  |   |||||| |||||||||||||||||    
T  19110408 ggagacaagcaaatgatgcagctcatgctttagctaaggcggctacattgtcagctagtttcctgttattatttttaatacctgattgtattgaacacat 19110309  T
Q  146 tttaagtaatgaaatgatataagcttcttttctt 179  Q
     || | |||||||||| | |||||||||| ||||    
T  19110308 attgattaatgaaatgctttaagcttcttctctt 19110275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 7644968 - 7644930
Alignment:
Q  130 attgtattgaacacattttaagtaatgaaatgatataag 168  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  7644968 attgtattgaacacattttaagtaataaaatgctataag 7644930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 24177710 - 24177775
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggcc 89  Q
    |||||| ||||||||||  |  |||| |||||||||||||  |||||||| |||||||||||||||    
T  24177710 aactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggcc 24177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 17237513 - 17237348
Alignment:
Q  10 aacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttcta 109  Q
    ||||||| |||||||||||||||||||||||  ||||||| ||| ||||||||||||| ||||||| || ||||| ||||||||||||| |||||||| |    
T  17237513 aacaatactatgtcaactctagtgttgagtttgtgaggaggcaaacaaatgaggcagcacatagataagttaaggaggccacatcctcagctagtttcca 17237414  T
Q  110 gattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17237413 gattttggtataaataccagattatattgaacacattttaagtaatgaaatgatataagcttcttt 17237348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 32295934 - 32295769
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||||||| ||||||||||||||||||||||  |||| |||||| |||||||||||||| |||||||||||||||   ||||||| ||| ||||||||     
T  32295934 gaacaatatcatgtcaactctagtgttgagtttgtgagaagacaaacaaatgaggcagcc-atagattagctaaggataccacatcttcagctagtttcc 32295836  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32295835 agattttgatagaaatatcagattgtattgaacacatttttagtaatgaaatgatataagcttcttt 32295769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 20174603 - 20174769
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||||||  |||||   | ||||| |||||||||| |||  ||| |||||||||    
T  20174603 gaacaatattatgtcaattctagtgttgagtttgtgaggagacaagcaaatgaaacagcctgcatattagttaaggcggccgcattttcagctagtttct 20174702  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  20174703 agattttgatagaaatatcagattgtattgaacacattttaagtaatgaaatgttataaacttcttt 20174769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 14724203 - 14724324
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    ||||||||||||||||||  ||||||  |||| ||||||||||   ||  |||  ||||||| | || |||||  | |||||||||| ||||||||||||    
T  14724203 ggagacaagcaaatgaggttgcccatgaattaactaaggcggctt-attatcagttagtttcgatatattggttaacataccagattatattgaacacat 14724301  T
Q  146 tttaagtaatgaaatgatataag 168  Q
    ||||| |||||||||| ||||||    
T  14724302 tttaaataatgaaatgctataag 14724324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 4852205 - 4852149
Alignment:
Q  112 ttttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataag 168  Q
    ||||||| || ||| || ||||||||||||||||||| | |||||||||| ||||||    
T  4852205 ttttggttgacatatcaaattgtattgaacacattttgattaatgaaatgttataag 4852149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 18579594 - 18579424
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||  ||||||||| ||| ||||||||     
T  18579594 gaacaatattatgtcaactttagtgttgagtttgtgaggagacaaacaaatgaggcagcccatagattagctaagtaggccacatcttcagctagtttcc 18579495  T
Q  109 agattttggtagaaatac----cagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    |||||||| |||||||||    || |||||||||||||||| |||||||||||||||||||||| ||||||    
T  18579494 agattttgatagaaataccatacatattgtattgaacacatgttaagtaatgaaatgatataagtttcttt 18579424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 5849175 - 5849325
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||      
T  5849175 gaacaatgttatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggcagctcatagattagctgaggcagccacatcctcaactagttttc 5849274  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaat 160  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  5849275 agattttggtagaaatgcccgattgtattgaa-acattttaagtaatgaaat 5849325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 15745633 - 15745492
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagatta---gctaaggcggccacatcctcaactagtt 105  Q
    |||||||||||||||||||||  |||||| ||  | |||||||||||||||||| ||||||||||||||   ||||||| ||||||||| ||| ||||||    
T  15745633 gaacaatattatgtcaactcttatgttgaatttgtaaggagacaagcaaatgagacagcccatagattattagctaaggaggccacatcttcagctagtt 15745534  T
Q  106 tctagattttggtagaaataccagattgtattgaacacattt 147  Q
    || ||||||| |||||||||||||||||||||||||||||||    
T  15745533 tccagattttagtagaaataccagattgtattgaacacattt 15745492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 36098842 - 36099008
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||||| ||||  ||||||||||| ||||| |||||||||||||| ||| | |||||||||| |||| ||| |||| ||||| ||| |||||    
T  36098842 gaacaatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcagctaatttct 36098941  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttttc 177  Q
     |||||| ||| |||||| ||||||| ||||||||| |||| ||||||||||| ||||| |||||||||    
T  36098942 cgatttttgtataaatactagattgtgttgaacaca-tttaggtaatgaaatgctataa-cttcttttc 36099008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 3981845 - 3981698
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaa 123  Q
    ||||||||||| ||||| ||  |||||||||| |||||||  ||||||  |||||||||||||||| |||| ||| |||||||| ||||| ||||  | |    
T  3981845 aactctagtgtggagtttattcggagacaagcgaatgaggttgcccatgaattagctaaggcggcctcatcatcagctagtttccagattctggttaata 3981746  T
Q  124 taccagattgtattgaacacattttaagtaatgaaatgatataagctt 171  Q
    ||||||| ||||||||||||||||| | |||||||||| |||||||||    
T  3981745 taccagaatgtattgaacacattttgattaatgaaatgctataagctt 3981698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 33170974 - 33170921
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgag 62  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  33170974 gaacaatattatgtcaactctagttttgagttcttgaggagacaagcaaatgag 33170921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 19933969 - 19933847
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    ||||||||||||||||||| ||||||  |||||| ||||| |||||||  ||  |||||||| | ||||||||      |||| ||||||||||||||||    
T  19933969 ggagacaagcaaatgaggctgcccatgaattagcaaaggctgccacattatcggctagtttccatattttggttacgccaccacattgtattgaacacat 19933870  T
Q  146 tttaagtaatgaaatgatataag 168  Q
    ||||| |||||| ||| ||||||    
T  19933869 tttaattaatgatatgttataag 19933847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 10421078 - 10420953
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    ||||||||| ||||||||||||||| |  |||||||||| ||||||||  ||| |||||||| |  || ||    |||||||| ||||||||||||||||    
T  10421078 ggagacaagtaaatgaggcagcccacactttagctaaggaggccacattatcagctagtttccaagttctgtataaaataccatattgtattgaacacat 10420979  T
Q  146 tttaagtaatgaaatgatataagctt 171  Q
    ||| | |||||| ||| | |||||||    
T  10420978 tttgattaatgatatgctttaagctt 10420953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 19051617 - 19051701
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacat 93  Q
    ||||||||||| | ||||| || |||||||||  ||| |||||||| |||||| |||||| ||||||||||||| ||| ||||||    
T  19051617 gaacaatattacgacaactataatgttgagtttgtgaagagacaagaaaatgaagcagccaatagattagctaaagcgaccacat 19051701  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 26510133 - 26510005
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    |||||||||||||||||||||| |||   |||| ||||||||| ||||  ||| |||||||| || | ||    | |||||| |||||||||||||||||    
T  26510133 ggagacaagcaaatgaggcagctcatgctttagttaaggcggctacattgtcagctagtttccagttattatatgtaatacctgattgtattgaacacat 26510034  T
Q  146 tttaagtaatgaaatgatataagcttctt 174  Q
     || | |||||||||| | ||||||||||    
T  26510033 attgattaatgaaatgctttaagcttctt 26510005  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 6742945 - 6742874
Alignment:
Q  97 caactagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataag 168  Q
    |||||||||| |||||||||||  | |||| | |||||||||||||||| |||| |||||||||| ||||||    
T  6742945 caactagtttttagattttggttaatatactaaattgtattgaacacatcttaattaatgaaatgctataag 6742874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 18076848 - 18076802
Alignment:
Q  114 ttggtagaaataccagattgtattgaacacattttaagtaatgaaat 160  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  18076848 ttggttgaaataccatattgtattgaacacactttaagtaatgaaat 18076802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 15521370 - 15521431
Alignment:
Q  100 ctagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatg 161  Q
    ||||||| | ||| |||||||||||| |||||||||||||||| ||||| | ||||||||||    
T  15521370 ctagttttttgatattggtagaaatatcagattgtattgaacatattttgattaatgaaatg 15521431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 26370455 - 26370611
Alignment:
Q  12 caatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctaga 111  Q
    ||||||||||  ||||| | |||||||||  || |||| |||||||||||||  || |||| |||||||||||| |||  ||  ||||||||| || ||     
T  26370455 caatattatgaaaactcgactgttgagtttgtgcggaggcaagcaaatgaggttgctcataaattagctaaggcagccttattgtcaactagtctccagg 26370554  T
Q  112 ttttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataag 168  Q
    || |  | ||||||||| ||||||||||| | | ||| | |||||||||| ||||||    
T  26370555 ttctatttgaaataccaaattgtattgaaaatactttgattaatgaaatgttataag 26370611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 30355365 - 30355294
Alignment:
Q  13 aatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggc 85  Q
    ||||||||||||| ||||||||||||||  ||| ||||||||||||||| ||| |  |||||| |||||||||    
T  30355365 aatattatgtcaa-tctagtgttgagtttgtgaagagacaagcaaatgaagcaacatatagatcagctaaggc 30355294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 22849524 - 22849646
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaa 123  Q
    |||||| ||||||||||  |  |||| |||||||||||||  |||||||| |||||||||||||||  ||| ||| |||| | | | || |||||    |    
T  22849524 aactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctagctcccaaatattggttacca 22849623  T
Q  124 taccagattgtattgaacacatt 146  Q
    ||||| |||||||||||||||||    
T  22849624 taccaaattgtattgaacacatt 22849646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 13911632 - 13911575
Alignment:
Q  122 aataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttttctt 179  Q
    |||||| ||||||||||||||||| || | |||||||||| | |||||||||| ||||    
T  13911632 aatacctgattgtattgaacacatattgattaatgaaatgctttaagcttcttctctt 13911575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 43680663 - 43680720
Alignment:
Q  122 aataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttttctt 179  Q
    |||||| |||||||||||||| || |||| |||||||||| | ||| |||||||||||    
T  43680663 aatacctgattgtattgaacatatattaattaatgaaatgttttaaacttcttttctt 43680720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 42132079 - 42132240
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||||||| | ||||||| ||| ||||||||     
T  42132079 gaacaatattatatcaactctagtgttgagtttgtgaggagacaaacaaatgaggcaacccatagattagctaaggtgaccacatcttcatctagtttcc 42132178  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagctt 171  Q
    | ||||||||| ||| | || ||||||||||||||||||||| ||||||||||||||||||||    
T  42132179 aaattttggta-aaaaaacatattgtattgaacacattttaaataatgaaatgatataagctt 42132240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 44022230 - 44022354
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||||||| |||||||||||||||||||||||  |||| |||||| |||||||| |||| |||||||||| ||||| || |||||||||| |||||||||    
T  44022230 gaacaatactatgtcaactctagtgttgagtttgtgagaagacaaacaaatgagacagctcatagattagttaaggtggtcacatcctcagctagtttct 44022329  T
Q  109 agattttggtagaaataccagattg 133  Q
    |||||||||||||||||||| ||||    
T  44022330 agattttggtagaaataccatattg 44022354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 30939676 - 30939509
Alignment:
Q  12 caatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctaga 111  Q
    |||||||||  |||||||| |  ||||||  ||| |||| ||| |||||||| | || |||||||| ||||||| ||||  | ||||||||||||| | |    
T  30939676 caatattataccaactctaataatgagtttgtgatgagataagaaaatgaggtaacctatagattaactaaggcagccaggttctcaactagtttccaaa 30939577  T
Q  112 ttttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttttctt 179  Q
     ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||||    
T  30939576 atttggtataaataccagattgtattgaacacgttttaagtaatgaaatgatatcaactccttttctt 30939509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 26056348 - 26056452
Alignment:
Q  63 gcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacattttaagtaatgaaatga 162  Q
    ||||| ||||||| |||||| ||||||||||||||| ||||||| || ||||||  | ||| |  |||||||  ||||||||||||||||||||||||||    
T  26056348 gcagctcatagatcagctaaagcggccacatcctcagctagtttttaaattttgaaaaaaacattagattgttctgaacacattttaagtaatgaaatga 26056447  T
Q  163 tataa 167  Q
    |||||    
T  26056448 tataa 26056452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 47142682 - 47142826
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaa 123  Q
    ||||||||||| ||||| ||  | |||||| | ||| |||  ||||||  |||||||||| ||||| |||| ||| |||||||| ||||| ||||  | |    
T  47142682 aactctagtgtggagtttattcgaagacaaacgaataaggttgcccatgaattagctaagtcggcctcatcatcagctagtttccagattctggttaata 47142781  T
Q  124 taccagattgtattgaacacattttaagtaatgaaatgatataag 168  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  47142782 taccagaatgtattgaacacattttgattaatgaaatgttataag 47142826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 32924093 - 32924232
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    ||||||||| ||||||||||||||||||||||  | |  ||||||| ||||||| || | ||||||||| |||||| || ||||   |||  ||||||      
T  32924093 gaacaatatcatgtcaactctagtgttgagtttgtaaaaagacaagtaaatgagacaactcatagattaactaagggggtcacactttcagatagttttc 32924192  T
Q  109 agattttggtagaaataccagattgtattgaacacatttt 148  Q
    ||||||||||||||||| || |||||||| |||| |||||    
T  32924193 agattttggtagaaatatcaaattgtattcaacatatttt 32924232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 20491531 - 20491663
Alignment:
Q  46 ggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaataccagattgtattgaacacat 145  Q
    ||||||||||||||||||  || |||| ||||||||||||||||  ||  ||||||||| || || || |  | ||||||||||||||||||||| | |     
T  20491531 ggagacaagcaaatgaggttgctcataaattagctaaggcggccttattgtcaactagtctccaggttctatttgaaataccagattgtattgaaaatac 20491630  T
Q  146 tttaagtaatgaaatgatataagcttcttttct 178  Q
    ||| | |||||||||| |||||| || ||||||    
T  20491631 tttgattaatgaaatgttataagtttgttttct 20491663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 22069947 - 22069985
Alignment:
Q  130 attgtattgaacacattttaagtaatgaaatgatataag 168  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  22069947 attgtattgaacacattttaaataatgaaatgctataag 22069985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 39637067 - 39637103
Alignment:
Q  125 accagattgtattgaacacattttaagtaatgaaatg 161  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  39637067 accacattgtattgaacacattttgagtaatgaaatg 39637103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 39645735 - 39645771
Alignment:
Q  125 accagattgtattgaacacattttaagtaatgaaatg 161  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  39645735 accacattgtattgaacacattttgagtaatgaaatg 39645771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 3585 - 3751
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||| ||||||||| |||||||||||||| ||  |||||||||||||||||||| || | | ||||||||||||| |||||||||||||| ||||||||     
T  3585 gaacgatattatgtgaactctagtgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttcc 3684  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    | |||||||| ||||| ||| ||| ||  ||||||||||||| |||||||||| |||||||||||||    
T  3685 aaattttggtcgaaatcccatattataccgaacacattttaaataatgaaatgttataagcttcttt 3751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 2016 - 1850
Alignment:
Q  9 gaacaatattatgtcaactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttct 108  Q
    |||| ||||||||| |||||||||||||| ||  |||||||||||||||||||| || | | ||||||||||||| |||||||||||||| ||||||||     
T  2016 gaacgatattatgtgaactctagtgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttcc 1917  T
Q  109 agattttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagcttcttt 175  Q
    | |||||||| ||||| ||| ||| ||  ||||||||||||| |||||||||| |||||||||||||    
T  1916 aaattttggtcgaaatcccatattataccgaacacattttaaataatgaaatgttataagcttcttt 1850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 11032 - 11169
Alignment:
Q  24 aactctagtgttgagttcatgaggagacaagcaaatgaggcagcccatagattagctaaggcggccacatcctcaactagtttctagattttggtagaaa 123  Q
    |||||| ||||||||||  |  |||| |||||||||||||  || ||||| |||||||| ||||||  ||| ||| |||| | | | |||||||||||||    
T  11032 aactctcgtgttgagtttgtacggaggcaagcaaatgaggttgctcatagtttagctaaagcggccttatcatcagctagctcccaaattttggtagaaa 11131  T
Q  124 taccagattgtattgaacacattttaagtaatgaaatg 161  Q
    ||||  ||||||||||||||||| ||  ||||||||||    
T  11132 tacctcattgtattgaacacattctatttaatgaaatg 11169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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