View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_high_15 (Length: 206)

Name: NF2460_high_15
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_high_15
NF2460_high_15
[»] chr5 (3 HSPs)
chr5 (19-103)||(1206803-1206889)
chr5 (106-153)||(13358439-13358486)
chr5 (112-166)||(30249354-30249408)
[»] scaffold0301 (1 HSPs)
scaffold0301 (104-165)||(8949-9010)
[»] chr6 (3 HSPs)
chr6 (104-167)||(18909125-18909188)
chr6 (102-166)||(22232579-22232643)
chr6 (104-166)||(3917570-3917632)
[»] chr3 (3 HSPs)
chr3 (103-166)||(35491055-35491118)
chr3 (104-149)||(14403175-14403220)
chr3 (104-144)||(44363482-44363522)
[»] chr7 (4 HSPs)
chr7 (104-166)||(44413284-44413346)
chr7 (103-167)||(43005639-43005703)
chr7 (103-166)||(18157299-18157362)
chr7 (104-144)||(23443600-23443640)
[»] chr4 (1 HSPs)
chr4 (103-166)||(8657547-8657610)
[»] chr2 (4 HSPs)
chr2 (104-166)||(24690113-24690175)
chr2 (104-166)||(24699464-24699526)
chr2 (103-167)||(18973130-18973194)
chr2 (104-144)||(17333892-17333932)
[»] chr1 (2 HSPs)
chr1 (104-166)||(51967950-51968012)
chr1 (104-166)||(15473850-15473912)
[»] scaffold1699 (1 HSPs)
scaffold1699 (104-166)||(1368-1430)
[»] scaffold0119 (1 HSPs)
scaffold0119 (104-165)||(40175-40236)
[»] scaffold0043 (1 HSPs)
scaffold0043 (106-166)||(33213-33273)
[»] chr8 (1 HSPs)
chr8 (112-166)||(13385692-13385745)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 1206803 - 1206889
Alignment:
Q  19 aacccatctttatgtgctaacaacact--gagagaaaggtagagatgagaagttgttactttgctgagaaaaatagggtttgctggc 103  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1206803 aacccatctttatgtgctaacaatatttggagagaaaggtagagatgagaagttgttactctgctgagaaaaatagggtttgctggc 1206889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 13358439 - 13358486
Alignment:
Q  106 tcatatcccaatttttgacttaagaacctacattcatacactctctga 153  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  13358439 tcatatcccaatttttgacctaagaccctacattcatacaccctctga 13358486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 30249354 - 30249408
Alignment:
Q  112 cccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||||||||||| || ||||||||||||||||||  |||||| |||||||||||    
T  30249354 cccaatttttgacctaggaacctacattcatacaccgtctgactcagaatattct 30249408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 8949 - 9010
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattc 165  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  8949 tgtcatatcctaatttttgacttaagaacctacattcatacaccctctgacccataatattc 9010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 18909125 - 18909188
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattctt 167  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  18909125 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccaaaatattctt 18909188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 22232643 - 22232579
Alignment:
Q  102 gctgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||||||| |||||||||| || ||||||||||||||||||||| |||||||||| ||||||||    
T  22232643 gctgtcataccccaatttttaacctaagaacctacattcatacaccctctgacccataatattct 22232579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 3917632 - 3917570
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||||| |||||||||| || ||||||||||||||||||||| |||| ||||| ||||||||    
T  3917632 tgtcataccccaatttttaacctaagaacctacattcatacaccctctaacccataatattct 3917570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 35491055 - 35491118
Alignment:
Q  103 ctgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    |||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  35491055 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacctagaatattct 35491118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 14403220 - 14403175
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactct 149  Q
    ||||||| ||||||||||||||||||| ||||| |||| |||||||    
T  14403220 tgtcataccccaatttttgacttaagatcctactttcacacactct 14403175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 44363522 - 44363482
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatac 144  Q
    ||||||| || |||||||||||||||| |||||||||||||    
T  44363522 tgtcataccctaatttttgacttaagatcctacattcatac 44363482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 44413346 - 44413284
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  44413346 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattct 44413284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 43005703 - 43005639
Alignment:
Q  103 ctgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattctt 167  Q
    |||||||| |||||||||| || ||||||||||||||||||||| |||||||||| |||||||||    
T  43005703 ctgtcataccccaattttttacctaagaacctacattcatacaccctctgacccaaaatattctt 43005639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 18157362 - 18157299
Alignment:
Q  103 ctgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    |||||||| |||| |||||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  18157362 ctgtcataccccagtttttgacctaagaacctacattcatacaccctctgacccataatattct 18157299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 23443600 - 23443640
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatac 144  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  23443600 tgtcataccccaatttttgacctaagaccctacattcatac 23443640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 8657547 - 8657610
Alignment:
Q  103 ctgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    |||||||| ||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||    
T  8657547 ctgtcataccccaatttttgacctaagaacctacattcatacaccctttgacccataatattct 8657610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 24690113 - 24690175
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||    
T  24690113 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaacccataatattct 24690175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 24699464 - 24699526
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||    
T  24699464 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaacccataatattct 24699526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 18973194 - 18973130
Alignment:
Q  103 ctgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattctt 167  Q
    |||||||| |||||||||||||  ||||| ||||||||||||||  ||||||||| |||||||||    
T  18973194 ctgtcataccccaatttttgaccaaagaatctacattcatacaccatctgacccataatattctt 18973130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 17333932 - 17333892
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatac 144  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  17333932 tgtcataccccaatttttgacctaagaccctacattcatac 17333892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 51967950 - 51968012
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||||| |||||||||| || ||||||||||||||||||||| |||||||||| ||||||||    
T  51967950 tgtcataccccaattttttacctaagaacctacattcatacaccctctgacccataatattct 51968012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 15473912 - 15473850
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||||| ||||||||||||| ||||| | ||||||||||||| |||||||||| ||||||||    
T  15473912 tgtcataccccaatttttgacctaagagcatacattcatacaccctctgacccataatattct 15473850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1699 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 1430 - 1368
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||||| |||||||||| || ||||||||||||||||||||| |||| ||||| ||||||||    
T  1430 tgtcataccccaattttttacctaagaacctacattcatacaccctctaacccataatattct 1368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 40236 - 40175
Alignment:
Q  104 tgtcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattc 165  Q
    |||||||  |||||||||||| ||||||||||||||||||||| || ||| |||||||||||    
T  40236 tgtcatactccaatttttgacctaagaacctacattcatacaccctttgatccagaatattc 40175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 33273 - 33213
Alignment:
Q  106 tcatatcccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    ||||| ||||| || |||| ||||||||||||||||||||| |||||||||| ||||||||    
T  33273 tcataccccaacttatgacctaagaacctacattcatacaccctctgacccataatattct 33213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 13385692 - 13385745
Alignment:
Q  112 cccaatttttgacttaagaacctacattcatacactctctgacccagaatattct 166  Q
    |||||||||||||| || | |||||||||||||| |||||||||| |||||||||    
T  13385692 cccaatttttgactaaa-atcctacattcatacagtctctgacccggaatattct 13385745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University