View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_high_16 (Length: 201)
Name: NF2460_high_16
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_high_16 |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: scaffold0114 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 5675 - 5786
Alignment:
| Q |
2 |
aaataatgtcccaaaacgtcttgtaaaaatgcccaccaaacccgtctggacccggcgcactatcatcattaagatgaaaaaccgcagactttatttcaga |
101 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
5675 |
aaataatgtcccaaaatgtctagtaaaaatgcccaccaaacccgtcaggacccggcgcactatcaccattaagatcaaaaaccgcagactttatttcaga |
5774 |
T |
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| Q |
102 |
catcacaggtaa |
113 |
Q |
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||||| |||||| |
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| T |
5775 |
catcataggtaa |
5786 |
T |
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