View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_high_8 (Length: 297)
Name: NF2460_high_8
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_high_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 31805795 - 31805913
Alignment:
| Q |
179 |
tctatgagaattagttgcaaaattggtagaaattctcatggaccatatacaattaatttttgttggcaggatggtaaagtgaatccagtgatcaaagaga |
278 |
Q |
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| T |
31805795 |
tctatgagaattagttgcaaaattggtagaaattctcatggaccatatacaattaatttttgctggcaggatgataaagtgaatccagtgatcaaagaga |
31805894 |
T |
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| Q |
279 |
gtatatgctatggtttcat |
297 |
Q |
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| T |
31805895 |
gtatatgctatggtttcat |
31805913 |
T |
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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 31789296 - 31789445
Alignment:
| Q |
94 |
tgcaggtgagcatttgtatatctgtcttcgatatcatgtctgcaagtggagaaaagtagttatctaaaactttattttactcaattctatgagaattagt |
193 |
Q |
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|||||||| ||||||| || | ||||||||||||||||| ||||| ||||||| |||| ||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
31789296 |
tgcaggtgggcatttgcatctttgtcttcgatatcatgtttgcaaatggagaacagtaattatctaaaacttcattttacccaattttatgagaattagt |
31789395 |
T |
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| Q |
194 |
tgcaaaattggtagaaattctcatggaccatatacaattaatttttgttg |
243 |
Q |
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|||||| |||||||||||||| |||||||||| |||| |||||||||||| |
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| T |
31789396 |
tgcaaacttggtagaaattctgatggaccatacacaagtaatttttgttg |
31789445 |
T |
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