View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_low_1 (Length: 380)

Name: NF2460_low_1
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_low_1
NF2460_low_1
[»] chr7 (5 HSPs)
chr7 (18-376)||(11606749-11607107)
chr7 (345-380)||(5039547-5039582)
chr7 (345-380)||(22268158-22268193)
chr7 (344-380)||(19914831-19914867)
chr7 (348-380)||(34659174-34659206)
[»] chr6 (7 HSPs)
chr6 (179-249)||(8649732-8649802)
chr6 (344-380)||(14107487-14107523)
chr6 (345-380)||(9179865-9179900)
chr6 (346-380)||(3030747-3030781)
chr6 (346-380)||(19230686-19230720)
chr6 (344-380)||(8612103-8612139)
chr6 (344-380)||(24671995-24672031)
[»] chr3 (8 HSPs)
chr3 (343-380)||(32873678-32873715)
chr3 (344-380)||(54261167-54261203)
chr3 (341-380)||(48341958-48341997)
chr3 (346-380)||(10855327-10855361)
chr3 (346-380)||(13893869-13893903)
chr3 (346-380)||(46530000-46530034)
chr3 (344-380)||(15320127-15320163)
chr3 (346-378)||(45877397-45877429)
[»] chr8 (8 HSPs)
chr8 (341-380)||(6940500-6940539)
chr8 (346-380)||(24938691-24938725)
chr8 (346-380)||(34846761-34846795)
chr8 (346-380)||(44893407-44893441)
chr8 (346-379)||(8141049-8141082)
chr8 (346-379)||(18091348-18091381)
chr8 (344-380)||(2467247-2467283)
chr8 (344-380)||(24837187-24837223)
[»] chr5 (9 HSPs)
chr5 (345-380)||(39728330-39728365)
chr5 (345-380)||(41163588-41163623)
chr5 (346-380)||(1538375-1538409)
chr5 (346-380)||(18136409-18136443)
chr5 (346-380)||(23383592-23383626)
chr5 (344-377)||(30349521-30349554)
chr5 (343-380)||(42861347-42861384)
chr5 (344-380)||(9812814-9812850)
chr5 (344-380)||(12704956-12704992)
[»] chr1 (5 HSPs)
chr1 (345-380)||(33418245-33418280)
chr1 (346-380)||(5855466-5855500)
chr1 (347-380)||(41663986-41664019)
chr1 (340-380)||(10336454-10336494)
chr1 (344-380)||(17642134-17642170)
[»] scaffold0029 (1 HSPs)
scaffold0029 (346-380)||(40990-41024)
[»] scaffold0016 (1 HSPs)
scaffold0016 (346-380)||(8839-8873)
[»] chr4 (6 HSPs)
chr4 (344-374)||(48656164-48656194)
chr4 (343-380)||(5472977-5473014)
chr4 (346-379)||(6779159-6779192)
chr4 (344-380)||(1940903-1940939)
chr4 (344-380)||(2559253-2559289)
chr4 (344-380)||(38165973-38166009)
[»] chr2 (4 HSPs)
chr2 (346-380)||(21180443-21180477)
chr2 (346-380)||(38005345-38005379)
chr2 (346-379)||(34356149-34356182)
chr2 (344-380)||(29422156-29422192)
[»] scaffold0006 (1 HSPs)
scaffold0006 (344-380)||(68461-68497)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 11606749 - 11607107
Alignment:
Q  18 acccacaagaatacaataaaccattacaatacagcaaactaaacataaaatccaaataaaaggacagcaaagcaccaatgaagctgacaaaggagagaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11606749 acccacaagaatacaataaaccattacaatacagcaaactaaacataaaatccaaataaaaggacagcaaagcaccaatgaagctgacaaaggagagaca 11606848  T
Q  118 acactagaaggtgaaagtcatataattaagccttagactagcatcaaactccttctaaaaatgagcaacctgcaaaattgatattaggcaggaaattcag 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11606849 acactagaaggtgaaagtcatataattaagcctcagactagcatcaaactccttctaaaaatgagcaacctgcaaaattgatattaggcaggaaagtcag 11606948  T
Q  218 ctcacatacaaacaacaatcaagtggatcttttaaacaaaaccactagaaaagctagtaaaacattagacttaaataaacacaaccatatttaagacaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||    
T  11606949 ctcacatacaaacaacaatcaagtggatcttttaaacaaaaccactagaaaagctagtaaaacaaaacacttaaataaacacaaccatatttaagacaaa 11607048  T
Q  318 tatgaacaaccaaatttaacatgtattaaaccaagttatttgggctccagtggcaagga 376  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  11607049 tatgaacaaccaaatttaacatgtattaaatcaagttgcttgggctccagtggcaagga 11607107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 5039582 - 5039547
Alignment:
Q  345 aaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||| |||||||||||||||||||||||||    
T  5039582 aaaccaagttgtttgggctccagtggcaaggagctc 5039547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 22268193 - 22268158
Alignment:
Q  345 aaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||| |||||||||||||||||||||||||    
T  22268193 aaaccaagttgtttgggctccagtggcaaggagctc 22268158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 19914867 - 19914831
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||||  ||||||||||||||||||||||||    
T  19914867 taaaccaagttgcttgggctccagtggcaaggagctc 19914831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 34659174 - 34659206
Alignment:
Q  348 ccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||| |||||||||||||||||||||||||    
T  34659174 ccaagttgtttgggctccagtggcaaggagctc 34659206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 8649732 - 8649802
Alignment:
Q  179 tgagcaacctgcaaaattgatattaggcaggaaattcagctcacatacaaacaacaatcaagtggatcttt 249  Q
    |||| |||||||||||||||||  ||||||||||  ||||||||||||||||||||||||||||| |||||    
T  8649732 tgagaaacctgcaaaattgataccaggcaggaaacccagctcacatacaaacaacaatcaagtggctcttt 8649802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 14107523 - 14107487
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| |||||||||||||||||||||||||    
T  14107523 taaaccaagttgtttgggctccagtggcaaggagctc 14107487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 9179900 - 9179865
Alignment:
Q  345 aaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||| |||||||||||||||||||||||||    
T  9179900 aaaccaagttgtttgggctccagtggcaaggagctc 9179865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 3030781 - 3030747
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  3030781 aaccaagttgtttgggctccagtggcaaggagctc 3030747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 19230720 - 19230686
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  19230720 aaccaagttgtttgggctccagtggcaaggagctc 19230686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 8612139 - 8612103
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  8612139 taaaccaagttgtttggactccagtggcaaggagctc 8612103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 24672031 - 24671995
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||||  ||||||||||||||||||||||||    
T  24672031 taaaccaagttgcttgggctccagtggcaaggagctc 24671995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 32873715 - 32873678
Alignment:
Q  343 ttaaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||||| |||||||||||||||||||||||||    
T  32873715 ttaaaccaagttgtttgggctccagtggcaaggagctc 32873678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 54261167 - 54261203
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| |||||||||||||||||||||||||    
T  54261167 taaaccaagttgtttgggctccagtggcaaggagctc 54261203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 341 - 380
Target Start/End: Original strand, 48341958 - 48341997
Alignment:
Q  341 tattaaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  48341958 tatttaaccaagttgtttgggctccagtggcaaggagctc 48341997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 10855327 - 10855361
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  10855327 aaccaagttgtttgggctccagtggcaaggagctc 10855361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 13893869 - 13893903
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  13893869 aaccaagttgtttgggctccagtggcaaggagctc 13893903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 46530034 - 46530000
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  46530034 aaccaagttgtttgggctccagtggcaaggagctc 46530000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 15320127 - 15320163
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  15320127 taaaccaagttgtttggactccagtggcaaggagctc 15320163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 45877397 - 45877429
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagc 378  Q
    ||||||||| |||||||||||||||||||||||    
T  45877397 aaccaagttgtttgggctccagtggcaaggagc 45877429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 341 - 380
Target Start/End: Original strand, 6940500 - 6940539
Alignment:
Q  341 tattaaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  6940500 tattaaaccaagttgtttgggctccagtggtaaggagctc 6940539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 24938725 - 24938691
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  24938725 aaccaagttgtttgggctccagtggcaaggagctc 24938691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 34846761 - 34846795
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  34846761 aaccaagttgtttgggctccagtggcaaggagctc 34846795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 44893441 - 44893407
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  44893441 aaccaagttgtttgggctccagtggcaaggagctc 44893407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 379
Target Start/End: Original strand, 8141049 - 8141082
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagct 379  Q
    ||||||||| ||||||||||||||||||||||||    
T  8141049 aaccaagttgtttgggctccagtggcaaggagct 8141082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 379
Target Start/End: Original strand, 18091348 - 18091381
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagct 379  Q
    ||||||||| ||||||||||||||||||||||||    
T  18091348 aaccaagttgtttgggctccagtggcaaggagct 18091381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 2467283 - 2467247
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||||  ||||||||||||||||||||||||    
T  2467283 taaaccaagttgcttgggctccagtggcaaggagctc 2467247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 24837187 - 24837223
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||||  ||||||||||||||||||||||||    
T  24837187 taaaccaagttgcttgggctccagtggcaaggagctc 24837223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 380
Target Start/End: Original strand, 39728330 - 39728365
Alignment:
Q  345 aaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||| |||||||||||||||||||||||||    
T  39728330 aaaccaagttgtttgggctccagtggcaaggagctc 39728365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 41163623 - 41163588
Alignment:
Q  345 aaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||| |||||||||||||||||||||||||    
T  41163623 aaaccaagttgtttgggctccagtggcaaggagctc 41163588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 1538375 - 1538409
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  1538375 aaccaagttgtttgggctccagtggcaaggagctc 1538409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 18136443 - 18136409
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  18136443 aaccaagttgtttgggctccagtggcaaggagctc 18136409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 23383592 - 23383626
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  23383592 aaccaagttgtttgggctccagtggcaaggagctc 23383626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 30349521 - 30349554
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggag 377  Q
    ||||||||||| ||||||||||||||||||||||    
T  30349521 taaaccaagttgtttgggctccagtggcaaggag 30349554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 42861384 - 42861347
Alignment:
Q  343 ttaaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| || |||||||||||||||||||||||||    
T  42861384 ttaaaccaaattgtttgggctccagtggcaaggagctc 42861347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 9812814 - 9812850
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  9812814 taaaccaagttgtttggactccagtggcaaggagctc 9812850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 12704956 - 12704992
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  12704956 taaaccaagttgtttggactccagtggcaaggagctc 12704992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 33418280 - 33418245
Alignment:
Q  345 aaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||||| |||||||||||||||||||||||||    
T  33418280 aaaccaagttgtttgggctccagtggcaaggagctc 33418245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 5855466 - 5855500
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  5855466 aaccaagttgtttgggctccagtggcaaggagctc 5855500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 41664019 - 41663986
Alignment:
Q  347 accaagttatttgggctccagtggcaaggagctc 380  Q
    |||||||| |||||||||||||||||||||||||    
T  41664019 accaagttgtttgggctccagtggcaaggagctc 41663986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 10336454 - 10336494
Alignment:
Q  340 gtattaaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||| ||||||||||| |||| ||||||||||||||||||    
T  10336454 gtatttaaccaagttatctgggttccagtggcaaggagctc 10336494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 17642170 - 17642134
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  17642170 taaaccaagttgtttgggctccagtgacaaggagctc 17642134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 40990 - 41024
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  40990 aaccaagttgtttgggctccagtggcaaggagctc 41024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 8873 - 8839
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  8873 aaccaagttgtttgggctccagtggcaaggagctc 8839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 48656164 - 48656194
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaag 374  Q
    |||||||||||||||||||||||||||||||    
T  48656164 taaaccaagttatttgggctccagtggcaag 48656194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 5473014 - 5472977
Alignment:
Q  343 ttaaaccaagttatttgggctccagtggcaaggagctc 380  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  5473014 ttaaactaagttgtttgggctccagtggcaaggagctc 5472977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 379
Target Start/End: Original strand, 6779159 - 6779192
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagct 379  Q
    ||||||||| ||||||||||||||||||||||||    
T  6779159 aaccaagttgtttgggctccagtggcaaggagct 6779192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 1940939 - 1940903
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  1940939 taaaccaagttgtttgggctctagtggcaaggagctc 1940903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 2559253 - 2559289
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  2559253 taaaccaagttgtttgggctccagtggcaacgagctc 2559289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 38165973 - 38166009
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  38165973 taaaccaagttgtttgggctccactggcaaggagctc 38166009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 21180477 - 21180443
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  21180477 aaccaagttgtttgggctccagtggcaaggagctc 21180443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 38005345 - 38005379
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  38005345 aaccaagttgtttgggctccagtggcaaggagctc 38005379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 379
Target Start/End: Original strand, 34356149 - 34356182
Alignment:
Q  346 aaccaagttatttgggctccagtggcaaggagct 379  Q
    ||||||||| ||||||||||||||||||||||||    
T  34356149 aaccaagttgtttgggctccagtggcaaggagct 34356182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 29422156 - 29422192
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  29422156 taaaccaagttgtttgggctccagtagcaaggagctc 29422192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 68461 - 68497
Alignment:
Q  344 taaaccaagttatttgggctccagtggcaaggagctc 380  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  68461 taaaccaagttgtttgggctctagtggcaaggagctc 68497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University