View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_13 (Length: 392)
Name: NF2460_low_13
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45305077 - 45304856
Alignment:
| Q |
1 |
catcagtaggagatcatagcaagagatcagagttgaataataataataatccatctgcagcagttgtggtgagttcaagatggaatccaacaccagaaca |
100 |
Q |
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| T |
45305077 |
catcagtaggagatcatagcaagagatcagagttgaataataataataatccatctgcagcagttgtggtgagttcaagatggaatccaacaccagaaca |
45304978 |
T |
|
| Q |
101 |
gttaagagcactggaagaattgtatagaagaggaacaagaacaccttctgctgagcaaatccaacaaataactgcccagcttagaaaatttggaaaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45304977 |
gttaagagcactggaagaattgtatagaagaggaacaagaacaccttctgctgagcaaatccaacaaataactgcccagcttagaaaatttggaaaaatt |
45304878 |
T |
|
| Q |
201 |
gaaggcaaaaatgttttctatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
45304877 |
gaaggcaaaaatgttttctatt |
45304856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 40005052 - 40004937
Alignment:
| Q |
107 |
agcactggaagaattgtatagaagaggaacaagaacaccttctgctgagcaaatccaacaaataactgcccagcttagaaaatttggaaaaattgaaggc |
206 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
40005052 |
agcagtggaagaattgtatagaagaggaacaagaacaccttctgctgagcaaatccaacaaatcactgcccagcttagaaaaattggaaaaattgaaggc |
40004953 |
T |
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| Q |
207 |
aaaaatgttttctatt |
222 |
Q |
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|||||||||||||||| |
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| T |
40004952 |
aaaaatgttttctatt |
40004937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40005110 - 40005047
Alignment:
| Q |
1 |
catcagtaggagatcatagcaagagatcagagttgaataataataataatccatctgcagcagt |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40005110 |
catcagtaggagatcatagcaagagatcagagttgaataataataataatccatctgcagcagt |
40005047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 40220499 - 40220609
Alignment:
| Q |
112 |
tggaagaattgtatagaagaggaacaagaacaccttctgctgagcaaatccaacaaataactgcccagcttagaaaatttggaaaaattgaaggcaaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220499 |
tggaagaattgtatagaagaggaacaagaacaccttatgctgagcaaatccaacagatcactgcccagcttagaaaatttggaaaaattgaaggcaaaaa |
40220598 |
T |
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| Q |
212 |
tgttttctatt |
222 |
Q |
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||||||||||| |
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| T |
40220599 |
tgttttctatt |
40220609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40220436 - 40220499
Alignment:
| Q |
1 |
catcagtaggagatcatagcaagagatcagagttgaataataataataatccatctgcagcagt |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
40220436 |
catcagtaggagatcatagcaagagatcagagttgaataataataataattcatctgcaacagt |
40220499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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