View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_17 (Length: 361)
Name: NF2460_low_17
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_17 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 203 - 354
Target Start/End: Original strand, 9248706 - 9248858
Alignment:
| Q |
203 |
ctctctctcactccatttaaatcaaaaccaattatatacgatgtagatggatggttggtggtagtgctctcaggcccttaaggccaaccaccaactga-c |
301 |
Q |
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| T |
9248706 |
ctctctctctctccatttaaatcaaaaccaattatatacgatgtagatccaaggttagtggtagtgctctcgggcccttaaggccaacaaccaactgacc |
9248805 |
T |
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| Q |
302 |
gtcatcagtgccattgggatactttcagtcacacgctaccttcgtctgtggtg |
354 |
Q |
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| T |
9248806 |
gtcattagtgccattgggatattttcagtcacacgccaccttcgtttgtggtg |
9248858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 206 - 354
Target Start/End: Original strand, 9244493 - 9244642
Alignment:
| Q |
206 |
tctctcactccatttaaatcaaaaccaattatatacgatgtagatggatggttggtggtagtgctctcaggcccttaaggccaaccaccaactga-cgtc |
304 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||| || | |||| ||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
9244493 |
tctctctctccatttaaatgaaaaccaattatatacgatgtatatccaaggttattggtagtgctctcgggcccttaaggccaaccaccaactgaccgtc |
9244592 |
T |
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| Q |
305 |
atcagtgccattgggatactttcagtcacacgctaccttcgtctgtggtg |
354 |
Q |
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| T |
9244593 |
attagtgccattgggatactttcagtcacacgccaccttcgtttgtggtg |
9244642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 9248641 - 9248688
Alignment:
| Q |
156 |
ctaaagctaaatttaagaaacatgtaaatttcaaggtgccaagaaaac |
203 |
Q |
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| T |
9248641 |
ctaaagctaaatttaagaaacatgtaaatttctgggtgccaacaaaac |
9248688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 206 - 354
Target Start/End: Complemental strand, 5268 - 5119
Alignment:
| Q |
206 |
tctctcactccatttaaatcaaaaccaattatatacgatgtagatggatggttggtggtagtgctctcaggcccttaaggccaaccaccaactga-cgtc |
304 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||| || | |||| ||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
5268 |
tctctctctccatttaaatgaaaaccaattatatacgatgtatatccaaggttattggtagtgctctcgggcccttaaggccaaccaccaactgaccgtc |
5169 |
T |
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| Q |
305 |
atcagtgccattgggatactttcagtcacacgctaccttcgtctgtggtg |
354 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
5168 |
attagtgccattgggatactttcagtcacacgccaccttcgtttgtggtg |
5119 |
T |
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