View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_18 (Length: 353)
Name: NF2460_low_18
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 50275919 - 50275603
Alignment:
| Q |
9 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275919 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
50275820 |
T |
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| Q |
109 |
aacttctcaaggtgattttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttag |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275819 |
aacttctcaaggtgattttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttag |
50275720 |
T |
|
| Q |
209 |
aatgaataagcggttacatcaagact----ttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttact |
304 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275719 |
aatgaataagcgattacatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttact |
50275620 |
T |
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| Q |
305 |
tctttctttgcatttgt |
321 |
Q |
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||||||||||||||||| |
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| T |
50275619 |
tctttctttgcatttgt |
50275603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 50279943 - 50279627
Alignment:
| Q |
9 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279943 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
50279844 |
T |
|
| Q |
109 |
aacttctcaaggtgattttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttag |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279843 |
aacttctcaaggtgattttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttag |
50279744 |
T |
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| Q |
209 |
aatgaataagcggttacatcaagact----ttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttact |
304 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279743 |
aatgaataagcgattacatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttact |
50279644 |
T |
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| Q |
305 |
tctttctttgcatttgt |
321 |
Q |
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||||||||||||||||| |
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| T |
50279643 |
tctttctttgcatttgt |
50279627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 14462564 - 14462668
Alignment:
| Q |
9 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462564 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
14462663 |
T |
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| Q |
109 |
aactt |
113 |
Q |
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||||| |
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| T |
14462664 |
aactt |
14462668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 22610169 - 22610283
Alignment:
| Q |
9 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
108 |
Q |
| |
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|||||||| |||||| |||||||||||||||| || | |||||||||||||||||| | |||||||| ||| || |||| ||||| ||| |||||||| | |
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| T |
22610169 |
agcataggggcaaagactgatgtatttcacatgctctatgggttgtggaagacaccagtagaaagattttttatttggcatggtgcatttcgttcatctg |
22610268 |
T |
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| Q |
109 |
aacttctcaaggtga |
123 |
Q |
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|| |||||||||||| |
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| T |
22610269 |
aaattctcaaggtga |
22610283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 14931420 - 14931491
Alignment:
| Q |
52 |
tgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
123 |
Q |
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||||||| |||||||| ||||| |||||| | ||||||||||| || || || || |||||||||||||||| |
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| T |
14931420 |
tgtggaaaacacctgctgaaaggtgtttcttatggcttggtggttttcggtcgtctgaacttctcaaggtga |
14931491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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