View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_low_2 (Length: 588)

Name: NF2460_low_2
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_low_2
NF2460_low_2
[»] scaffold0052 (17 HSPs)
scaffold0052 (84-521)||(28790-29220)
scaffold0052 (84-521)||(49398-49828)
scaffold0052 (84-521)||(19518-19948)
scaffold0052 (84-521)||(51990-52419)
scaffold0052 (84-418)||(70582-70916)
scaffold0052 (288-521)||(62318-62542)
scaffold0052 (84-257)||(62547-62720)
scaffold0052 (355-521)||(71077-71234)
scaffold0052 (455-521)||(70913-70979)
scaffold0052 (355-404)||(71332-71381)
scaffold0052 (361-405)||(71245-71289)
scaffold0052 (359-406)||(19957-20004)
scaffold0052 (359-406)||(29229-29276)
scaffold0052 (359-406)||(52428-52475)
scaffold0052 (359-406)||(70988-71035)
scaffold0052 (359-406)||(49837-49884)
scaffold0052 (361-406)||(62262-62307)
[»] scaffold0055 (15 HSPs)
scaffold0055 (84-521)||(68026-68456)
scaffold0055 (84-521)||(70946-71377)
scaffold0055 (84-521)||(52491-52920)
scaffold0055 (84-521)||(54383-54813)
scaffold0055 (84-418)||(13619-13953)
scaffold0055 (283-521)||(33517-33746)
scaffold0055 (84-257)||(33345-33518)
scaffold0055 (355-521)||(13301-13458)
scaffold0055 (455-521)||(13556-13622)
scaffold0055 (355-404)||(13154-13203)
scaffold0055 (361-405)||(13246-13290)
scaffold0055 (359-406)||(13500-13547)
scaffold0055 (359-406)||(52929-52976)
scaffold0055 (359-406)||(54822-54869)
scaffold0055 (359-406)||(68465-68512)
[»] scaffold0021 (7 HSPs)
scaffold0021 (84-521)||(47660-48090)
scaffold0021 (326-521)||(33658-33845)
scaffold0021 (359-408)||(33854-33903)
scaffold0021 (210-255)||(33616-33661)
scaffold0021 (355-406)||(33943-33994)
scaffold0021 (359-406)||(48099-48146)
scaffold0021 (355-404)||(94694-94743)
[»] scaffold0061 (1 HSPs)
scaffold0061 (106-345)||(53565-53806)
[»] scaffold0017 (1 HSPs)
scaffold0017 (106-345)||(144828-145069)
[»] chr6 (7 HSPs)
chr6 (92-189)||(5308089-5308186)
chr6 (453-521)||(9476300-9476367)
chr6 (454-508)||(9485655-9485709)
chr6 (339-408)||(9485837-9485906)
chr6 (359-394)||(9485598-9485633)
chr6 (355-408)||(9476372-9476425)
chr6 (342-394)||(9476106-9476158)
[»] chr3 (2 HSPs)
chr3 (91-189)||(54749160-54749258)
chr3 (453-520)||(32148912-32148978)
[»] chr2 (1 HSPs)
chr2 (355-420)||(9269599-9269664)


Alignment Details
Target: scaffold0052 (Bit Score: 357; Significance: 0; HSPs: 17)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 84 - 521
Target Start/End: Original strand, 28790 - 29220
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28790 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 28889  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  28890 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccg 28989  T
Q  282 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacac 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28990 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaggagacgcacaagtttttccgagaagggaccaacac 29089  T
Q  382 ggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 481  Q
    ||||||||||||| ||| |||||||||||||||||||||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29090 ggctatgtttattgacctgcactgcaactcaactcaaac---------acggcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 29180  T
Q  482 gtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||| |||||||| |||| |||||||||||||||||||||    
T  29181 gttttgtatgcaagtgctagtcgccccgcagcgttacaag 29220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 84 - 521
Target Start/End: Original strand, 49398 - 49828
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49398 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 49497  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  49498 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccg 49597  T
Q  282 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacac 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  49598 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaggagacgcacaagtttttccgagaagggaccaacac 49697  T
Q  382 ggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 481  Q
    ||||||||||||| ||| |||||||||||||||||||||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49698 ggctatgtttattgacctgcactgcaactcaactcaaac---------acggcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 49788  T
Q  482 gtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||| |||||||| |||| |||||||||||||||||||||    
T  49789 gttttgtatgcaagtgctagtcgccccgcagcgttacaag 49828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 84 - 521
Target Start/End: Original strand, 19518 - 19948
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19518 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 19617  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  19618 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccg 19717  T
Q  282 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacac 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  19718 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaggagacgcacaagttttcccgagaagggaccaacac 19817  T
Q  382 ggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 481  Q
    ||||||||||||| ||| |||||||||||||||  ||||         ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19818 ggctatgtttattgacctgcactgcaactcaacataaac---------acagcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 19908  T
Q  482 gtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||| |||||||| |||| ||||||||||| |||||||||    
T  19909 gttttgtatgcaagtgctagtcgccccgcaccgttacaag 19948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 84 - 521
Target Start/End: Original strand, 51990 - 52419
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51990 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 52089  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  52090 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccg 52189  T
Q  282 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacac 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  52190 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaggagacgcacaag-ttttccgagaagggaccaacac 52288  T
Q  382 ggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 481  Q
    ||||||||||||| ||| |||||||||||||||  ||||         ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52289 ggctatgtttattgacctgcactgcaactcaacataaac---------acagcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 52379  T
Q  482 gtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||| |||||||| |||| ||||||||||| |||||||||    
T  52380 gttttgtatgcaagtgctagtcgccccgcaccgttacaag 52419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 84 - 418
Target Start/End: Original strand, 70582 - 70916
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  70582 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 70681  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcggaacatcccacaccccacaatgccgag 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  70682 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcacggaacatcccacaccccacaatgccgag 70781  T
Q  284 gcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacacgg 383  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  70782 gcatgcagccatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcacaagtttttccgagaagggaccaacacgg 70881  T
Q  384 ctatgtttatttaccagcactgcaactcaactcaa 418  Q
    ||||||||||| |||||||||||||||||||||||    
T  70882 ctatgtttattgaccagcactgcaactcaactcaa 70916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 288 - 521
Target Start/End: Complemental strand, 62542 - 62318
Alignment:
Q  288 gcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacacggctat 387  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  62542 gcaggcatagggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcacaagtgtttccgagaagggaccaacacggctat 62443  T
Q  388 gtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcg 487  Q
    ||||||| |||  |||| |||||||||||||||         || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  62442 gtttattgacctacactacaactcaactcaaac---------acaacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttg 62352  T
Q  488 tatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    ||||||| |||| |||||||||||||||||||||    
T  62351 tatgcaagtgctagtcgccccgcagcgttacaag 62318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 84 - 257
Target Start/End: Complemental strand, 62720 - 62547
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  62720 atttatggttaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacgatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 62621  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgg 257  Q
    | ||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  62620 gtattgagcaagtaaacacaaacatccacgctaccactcacatgccctcgcgtctacaaaaaccaacatcgcgg 62547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 355 - 521
Target Start/End: Original strand, 71077 - 71234
Alignment:
Q  355 caagtttttccgagaagggaccaacacggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgag 454  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||         |||||||||||||||||||||||||    
T  71077 caagtttttccgagaagggaccaacacggctatgtttattgacctgcactgcaactcaactcaaac---------acgacaaagattaagaggacgtgag 71167  T
Q  455 tcaacccaaattcaatgccacgagagagtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  71168 tcaacctaaattcaatgccacgagagagtttcgtatgcaagtgctggtcgccccgcagcgttacaag 71234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 455 - 521
Target Start/End: Original strand, 70913 - 70979
Alignment:
Q  455 tcaacccaaattcaatgccacgagagagtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||    
T  70913 tcaacccaaattcaatgccacgaaagagtttcgtatgcaaatgctggtcgccctgcatcgttacaag 70979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 71332 - 71381
Alignment:
Q  355 caagtttttccgagaagggaccaacacggctatgtttatttaccagcact 404  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  71332 caagtttttccgaggagggaccaacacggctatgtttattgacctgcact 71381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 71245 - 71289
Alignment:
Q  361 tttccgagaagggaccaacacggctatgtttatttaccagcactg 405  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
T  71245 tttccgaggagggaccaacacggctatgtttattgaccagcactg 71289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 19957 - 20004
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  19957 tttttccgaggagggaccaacacggctatgtttattgacctgcactgc 20004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 29229 - 29276
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  29229 tttttccgaggagggaccaacacggctatgtttattgacctgcactgc 29276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 52428 - 52475
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  52428 tttttccgaggagggaccaacacggctatgtttattgacctgcactgc 52475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 70988 - 71035
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    ||||||||| |||||||||||||||||||||||||| ||| |||||||    
T  70988 tttttccgataagggaccaacacggctatgtttattgacctgcactgc 71035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 49837 - 49884
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||| ||| ||||||||||||||||||||||||| ||| |||||||    
T  49837 tttttctgaggagggaccaacacggctatgtttattgacctgcactgc 49884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 62307 - 62262
Alignment:
Q  361 tttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||||| |||||||||||| |||||||||||| ||| |||||||    
T  62307 tttccgaggagggaccaacacagctatgtttattgacctgcactgc 62262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 353; Significance: 0; HSPs: 15)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 84 - 521
Target Start/End: Original strand, 68026 - 68456
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  68026 atttatgcgtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 68125  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  68126 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccg 68225  T
Q  282 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacac 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  68226 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaggagacgcacaagtttttccgagaagggaccaacac 68325  T
Q  382 ggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 481  Q
    ||||||||||||| ||| |||||||||||||||||||||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  68326 ggctatgtttattgacctgcactgcaactcaactcaaac---------acggcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 68416  T
Q  482 gtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||| |||||||| |||| |||||||||||||||||||||    
T  68417 gttttgtatgcaagtgctagtcgccccgcagcgttacaag 68456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 84 - 521
Target Start/End: Original strand, 70946 - 71377
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  70946 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 71045  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  71046 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccg 71145  T
Q  282 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacac 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  71146 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaggagacgcacaagtttttccgagaagggaccaacac 71245  T
Q  382 ggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaaccc-aaattcaatgccacgagag 480  Q
    ||||||||||||| ||| |||||||||||||||||||||         ||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  71246 ggctatgtttattgacctgcactgcaactcaactcaaac---------acggcaaagattaagaggacgtgagtcaacccaaaattcaatgccacgagag 71336  T
Q  481 agtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    ||||| |||||||| |||| |||||||||||||||||||||    
T  71337 agttttgtatgcaagtgctagtcgccccgcagcgttacaag 71377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 84 - 521
Target Start/End: Original strand, 52491 - 52920
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52491 atttatgggtaaaccaa-caggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 52589  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  52590 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccg 52689  T
Q  282 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacac 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  52690 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaggagacgcacaagttttcccgagaagggaccaacac 52789  T
Q  382 ggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 481  Q
    ||||||||||||| ||| |||||||||||||||||||||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52790 ggctatgtttattgacctgcactgcaactcaactcaaac---------acggcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 52880  T
Q  482 gtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||| |||||||| |||| |||||||||||||||||||||    
T  52881 gttttgtatgcaagtgctagtcgccccgcagcgttacaag 52920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 84 - 521
Target Start/End: Original strand, 54383 - 54813
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54383 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 54482  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  54483 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccg 54582  T
Q  282 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacac 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  54583 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaggagacgcacaagtttttccgagaagggaccaacac 54682  T
Q  382 ggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 481  Q
    ||||||||||||| ||| |||||||||||||||  ||||         ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54683 ggctatgtttattgacctgcactgcaactcaacataaac---------acagcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 54773  T
Q  482 gtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||| |||||||| |||| ||||||||||| |||||||||    
T  54774 gttttgtatgcaagtgctagtcgccccgcaccgttacaag 54813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 84 - 418
Target Start/End: Complemental strand, 13953 - 13619
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13953 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 13854  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcggaacatcccacaccccacaatgccgag 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  13853 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcacggaacatcccacaccccacaatgccgag 13754  T
Q  284 gcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacacgg 383  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13753 gcatgcagccatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcacaagtttttccgagaagggaccaacacgg 13654  T
Q  384 ctatgtttatttaccagcactgcaactcaactcaa 418  Q
    ||||||||||| |||||||||||||||||||||||    
T  13653 ctatgtttattgaccagcactgcaactcaactcaa 13619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 283 - 521
Target Start/End: Original strand, 33517 - 33746
Alignment:
Q  283 ggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacacg 382  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  33517 ggcatgcaggcatagggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcacaagtgtttccgagaagggaccaacacg 33616  T
Q  383 gctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagag 482  Q
    |||||||||||| |||  |||| |||||||||||||||         || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33617 gctatgtttattgacctacactacaactcaactcaaac---------acaacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagag 33707  T
Q  483 tttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    ||| |||||||| |||| |||||||||||||||||||||    
T  33708 ttttgtatgcaagtgctagtcgccccgcagcgttacaag 33746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 84 - 257
Target Start/End: Original strand, 33345 - 33518
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  33345 atttatggttaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacgatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 33444  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgg 257  Q
    | ||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  33445 gtattgagcaagtaaacacaaacatccacgctaccactcacatgccctcgcgtctacaaaaaccaacatcgcgg 33518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 355 - 521
Target Start/End: Complemental strand, 13458 - 13301
Alignment:
Q  355 caagtttttccgagaagggaccaacacggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgag 454  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||         |||||||||||||||||||||||||    
T  13458 caagtttttccgagaagggaccaacacggctatgtttattgacctgcactgcaactcaactcaaac---------acgacaaagattaagaggacgtgag 13368  T
Q  455 tcaacccaaattcaatgccacgagagagtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13367 tcaacctaaattcaatgccacgagagagtttcgtatgcaagtgctggtcgccccgcagcgttacaag 13301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 455 - 521
Target Start/End: Complemental strand, 13622 - 13556
Alignment:
Q  455 tcaacccaaattcaatgccacgagagagtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||    
T  13622 tcaacccaaattcaatgccacgaaagagtttcgtatgcaaatgctggtcgccctgcatcgttacaag 13556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 13203 - 13154
Alignment:
Q  355 caagtttttccgagaagggaccaacacggctatgtttatttaccagcact 404  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  13203 caagtttttccgaggagggaccaacacggctatgtttattgacctgcact 13154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 13290 - 13246
Alignment:
Q  361 tttccgagaagggaccaacacggctatgtttatttaccagcactg 405  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
T  13290 tttccgaggagggaccaacacggctatgtttattgaccagcactg 13246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 13547 - 13500
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    ||||||||| |||||||||||||||||||||||||| ||| |||||||    
T  13547 tttttccgataagggaccaacacggctatgtttattgacctgcactgc 13500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 52929 - 52976
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  52929 tttttccgaggagggaccaacacggctatgtttattgacctgcactgc 52976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 54822 - 54869
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  54822 tttttccgaggagggaccaacacggctatgtttattgacctgcactgc 54869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 68465 - 68512
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  68465 tttttccgaggagggaccaacacggctatgtttattgacctgcactgc 68512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 353; Significance: 0; HSPs: 7)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 84 - 521
Target Start/End: Original strand, 47660 - 48090
Alignment:
Q  84 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47660 atttatgggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaa 47759  T
Q  184 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  47760 gcattgagccagcaaacacaaacatccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccg 47859  T
Q  282 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacac 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  47860 aggcatgcaggcatatggaagcatccaacaacgccgactccgcttcgctaagcatgaaaattaaggagacgcacaagtttttccgagaagggaccaacac 47959  T
Q  382 ggctatgtttatttaccagcactgcaactcaactcaaacttcgctaatacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 481  Q
    ||||||||||||| ||| |||||||||||||||||||||         ||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  47960 ggctatgtttattgacctgcactgcaactcaactcaaac---------acggcatagattaagaggacgtgagtcaacccaaattcaatgccacgagaga 48050  T
Q  482 gtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    |||| |||||||| |||| |||||||||||||||||||||    
T  48051 gttttgtatgcaagtgctagtcgccccgcagcgttacaag 48090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 326 - 521
Target Start/End: Original strand, 33658 - 33845
Alignment:
Q  326 tcgctaagcatgaaaattaaagagacgcgcaagtttttccgagaagggaccaacacggctatgtttatttaccagcactgcaactcaactcaaacttcgc 425  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||         
T  33658 tcgctaagcatgaaaattaaagagacgcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgcaactcaactcaaac----- 33752  T
Q  426 taatacgacaaagattaaga-ggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
        || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  33753 ----acaacaaagattaagatggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctggtagccccacagcgttacaag 33845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 33854 - 33903
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgcaa 408  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  33854 tttttccgataagggaccaacacggctatgtttattaaccagcactgcaa 33903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 33616 - 33661
Alignment:
Q  210 cacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgc 255  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  33616 cacgctaccactcacatgcccccgcgtctgcaaaaaccaacatcgc 33661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 33943 - 33994
Alignment:
Q  355 caagtttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||||||||| | ||||||||||||||||||||||||| ||| |||||||    
T  33943 caagtttttccgtggagggaccaacacggctatgtttattgacctgcactgc 33994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 48099 - 48146
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatttaccagcactgc 406  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  48099 tttttccgaggagggaccaacacggctatgtttattgacctgcactgc 48146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 94694 - 94743
Alignment:
Q  355 caagtttttccgagaagggaccaacacggctatgtttatttaccagcact 404  Q
    |||||||||||| | ||||||||||||||||||||||||| ||| |||||    
T  94694 caagtttttccgtggagggaccaacacggctatgtttattgacctgcact 94743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 106 - 345
Target Start/End: Original strand, 53565 - 53806
Alignment:
Q  106 aacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaagcattgagccagcaaacacaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53565 aacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaagcattgagccagcaaacacaaa 53664  T
Q  206 catccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccgaggcatgcaggcatatggaagc 303  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  53665 catccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccgaggcatgcaggcatatggaagc 53764  T
Q  304 atccaacaacgccgactccgcttcgctaagcatgaaaattaa 345  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  53765 atccaacaacgccgactccgcttcgctaagcatgaaaattaa 53806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 106 - 345
Target Start/End: Complemental strand, 145069 - 144828
Alignment:
Q  106 aacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaagcattgagccagcaaacacaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  145069 aacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcatatgcaaaccgttcaaagccaaagcattgagccagcaaacacaaa 144970  T
Q  206 catccacgctaccactcacatgccctcgcgtctgcaagaaccaacatcgcgga--acatcccacaccccacaatgccgaggcatgcaggcatatggaagc 303  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  144969 catccacgctaccactcacatgccctcgcgtctgcaaaaaccaacatcgcggaacacatcccacaccccacaatgccgaggcatgcaggcatatggaagc 144870  T
Q  304 atccaacaacgccgactccgcttcgctaagcatgaaaattaa 345  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  144869 atccaacaacgccgactccgcttcgctaagcatgaaaattaa 144828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 5308186 - 5308089
Alignment:
Q  92 gtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaagcattg 189  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||    
T  5308186 gtaaaccaaacaggaacaatggacaaacatcaaagatacaaagtcaacaatgaaaaatgatcaggatcatatgcaaatcgttcaaaaccagagcattg 5308089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 521
Target Start/End: Original strand, 9476300 - 9476367
Alignment:
Q  453 agtcaacccaaattcaatgccacgagagagtttcgtatgcaaatgctggtcgccccgcagcgttacaag 521  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||| | ||| | |||||||||||||||    
T  9476300 agtcaacccaaattcaatgccacgaaagagttttgta-gcaaatgttagtcactccgcagcgttacaag 9476367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 508
Target Start/End: Complemental strand, 9485709 - 9485655
Alignment:
Q  454 gtcaacccaaattcaatgccacgagagagtttcgtatgcaaatgctggtcgcccc 508  Q
    |||||| ||||||||||||||||| ||||||| ||| ||||||||| ||||||||    
T  9485709 gtcaactcaaattcaatgccacgaaagagttttgtaagcaaatgctagtcgcccc 9485655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 9485906 - 9485837
Alignment:
Q  339 aaattaaagagacgcgcaagtttttccgagaagggaccaacacggctatgtttatttaccagcactgcaa 408  Q
    ||||||||||||| | ||| | |||  |||||| |||||||||||||||||||||| ||| |||||||||    
T  9485906 aaattaaagagacacacaaatattttagagaagagaccaacacggctatgtttattgacctgcactgcaa 9485837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 394
Target Start/End: Complemental strand, 9485633 - 9485598
Alignment:
Q  359 tttttccgagaagggaccaacacggctatgtttatt 394  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9485633 tttttccgataagggaccaacacggctatgtttatt 9485598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 9476372 - 9476425
Alignment:
Q  355 caagtttttccgagaagggaccaacacggctatgtttatttaccagcactgcaa 408  Q
    ||||||||||||| |||||||||| | |||||||||||||  || |||||||||    
T  9476372 caagtttttccgataagggaccaaaatggctatgtttattgtcctgcactgcaa 9476425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 9476106 - 9476158
Alignment:
Q  342 ttaaagagacgcgcaagtttttccgagaagggaccaacacggctatgtttatt 394  Q
    |||| ||||||| ||||||||| |||||| | ||||||||| |||||||||||    
T  9476106 ttaacgagacgcacaagttttttcgagaatgaaccaacacgactatgtttatt 9476158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 54749258 - 54749160
Alignment:
Q  91 ggtaaaccaaacaggaacaacggacaaacatcgaagacacaaagtcaacaatgaaaaatgatcaggatcacatgcaaaccgttcaaagccaaagcattg 189  Q
    |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| || |||| |||||||| ||| |||||||    
T  54749258 ggtaaaccaaacaggaacaatggacaaacatcaaagatacaaagtcaacaatgaaaaatgatcaggatcatattcaaatcgttcaaaaccagagcattg 54749160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 520
Target Start/End: Original strand, 32148912 - 32148978
Alignment:
Q  453 agtcaacccaaattcaatgccacgagagagtttcgtatgcaaatgctggtcgccccgcagcgttacaa 520  Q
    |||| |||||||||||||||||||| ||||||| ||| ||||||||| |||| || ||| ||||||||    
T  32148912 agtcgacccaaattcaatgccacgaaagagttt-gtaagcaaatgctagtcgtccagcaacgttacaa 32148978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 9269599 - 9269664
Alignment:
Q  355 caagtttttccgagaagggaccaacacggctatgtttatttaccagcactgcaactcaactcaaac 420  Q
    |||| |||| ||||||||||| ||||||||| |||||||| ||| ||||| |||||| ||||||||    
T  9269599 caagatttttcgagaagggactaacacggctttgtttattaacctgcactacaactcgactcaaac 9269664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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