View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_low_22 (Length: 331)

Name: NF2460_low_22
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_low_22
NF2460_low_22
[»] chr1 (1 HSPs)
chr1 (11-304)||(34655685-34655982)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 34655685 - 34655982
Alignment:
Q  11 aaaatatattacaactgcacctaaagggcttaatactccacccaaaaaa--taccactatctacaccctaaccagctacaacaaccaataataagcacaa 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34655685 aaaatacattacaactgcacctaaagggcttaatactccacccaaaaaaaataccactatctacaccctaaccagctacaacaaccaataagaagcacaa 34655784  T
Q  109 aaataatacattgagagaaagnnnnnnnnnnn--cacagtgtctaggccgcaacagctccgaaacccccatccaccatgctcaccgaaatatgtccagct 206  Q
    |||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34655785 aaataatacattgagagaaagaagaaaaaaaaaacacagtgtctaggccgcaacagctccgaaacccccatccaccatgctcacccaaatatgtccagct 34655884  T
Q  207 ttacaccatctccatagacaatctccaggatctcaacaccacacataaaacaagcaaggcgtatacttcaatctagtgaatccccacctccaagataa 304  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  34655885 ctacaccatctccatagacaatctccaggatctcaacaccacacataaaacaagcaaggcgtacacttcaatctagcgaacccccacctccaagataa 34655982  T

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