View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_23 (Length: 327)
Name: NF2460_low_23
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 85 - 295
Target Start/End: Original strand, 34518422 - 34518632
Alignment:
| Q |
85 |
tttgtttcaacaaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaacgaaaaggtttaattttt |
184 |
Q |
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| T |
34518422 |
tttgtttcagcaaacatttgtaaaggatttggtttgaaggttttcataataatcccattcagttttaaaaactccataacaacgaaaaggtttaattttt |
34518521 |
T |
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| Q |
185 |
aacctcacttttccttcatcatatccaaattaacaacaaactttcagggtccattcaatccatactcaggaggatatcatttctaagctaaattgaagac |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
34518522 |
aacctcacttttccttcatcatatccaaattaacaacaaactttcagggtccatccaatccatactcaggaggacatcatttctaaggtaaattgaagac |
34518621 |
T |
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| Q |
285 |
ttgacatataa |
295 |
Q |
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||||||||||| |
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| T |
34518622 |
ttgacatataa |
34518632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 85 - 295
Target Start/End: Original strand, 27633601 - 27633814
Alignment:
| Q |
85 |
tttgtttcaacaaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaacgaaaaggtttaattttt |
184 |
Q |
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||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
27633601 |
tttgtttcagcaaacatttgtaaaggatttggtttaaaggttttcataataatcccattgagttttaaaaactccataacaatgaaaaggtttaattttt |
27633700 |
T |
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| Q |
185 |
aacctcacttttccttcatcatatccaaattaacaacaaactttcagggtcc---attcaatccatactcaggaggatatcatttctaagctaaattgaa |
281 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
27633701 |
aacctcacttttccttcattatatccaaattaacaacaaactttcagggtccattattcaatccatactcaggaggacatcatttctaaggtaaattgaa |
27633800 |
T |
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| Q |
282 |
gacttgacatataa |
295 |
Q |
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|||||||||||||| |
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| T |
27633801 |
gacttgacatataa |
27633814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 34527459 - 34527555
Alignment:
| Q |
95 |
caaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaacgaaaaggtttaatttttaacctca |
191 |
Q |
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|||| |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
34527459 |
caaacatttgtaaaggatttggtttaaaggttttcatgataatcctattcagttttaaaaactccataacaaagaaaatgtttaatttttaacctca |
34527555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 27618062 - 27618143
Alignment:
| Q |
85 |
tttgtttcaacaaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaa |
166 |
Q |
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||||||||| |||| ||||| |||| ||||| |||| ||| |||||| |||||| | ||||||| |||||||||||||||| |
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| T |
27618062 |
tttgtttcagcaaagatttgaaaagaatttggtttagaggctttcatgataatcttaatcagtttaaaaaactccataacaa |
27618143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 34506858 - 34506939
Alignment:
| Q |
85 |
tttgtttcaacaaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaa |
166 |
Q |
| |
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|||||||||||||| ||||| |||| |||| |||| ||| |||||| |||||| | ||||||| |||||||||||||||| |
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| T |
34506858 |
tttgtttcaacaaagatttgaaaagagtttggtttagaggctttcatgataatcttaatcagtttaaaaaactccataacaa |
34506939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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