View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_low_24 (Length: 325)

Name: NF2460_low_24
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_low_24
NF2460_low_24
[»] chr7 (14 HSPs)
chr7 (98-325)||(19103359-19103586)
chr7 (99-325)||(26179191-26179417)
chr7 (99-325)||(26155311-26155537)
chr7 (98-325)||(26087889-26088117)
chr7 (98-325)||(26111677-26111905)
chr7 (98-325)||(26128675-26128902)
chr7 (98-302)||(26186373-26186577)
chr7 (98-325)||(26191373-26191600)
chr7 (98-325)||(26301904-26302137)
chr7 (98-325)||(26223640-26223867)
chr7 (98-325)||(26204002-26204229)
chr7 (131-325)||(26297553-26297747)
chr7 (133-325)||(26250953-26251145)
chr7 (98-325)||(26242505-26242732)
[»] chr4 (1 HSPs)
chr4 (103-322)||(44903361-44903580)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 98 - 325
Target Start/End: Original strand, 19103359 - 19103586
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19103359 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 19103458  T
198 tattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgta 297  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19103459 cattggttcaaaataggcagtgacagaattctttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgta 19103558  T
298 aatttctgcgtatcagaaactaaattat 325  Q
    ||||||||||||||||||||||||||||    
19103559 aatttctgcgtatcagaaactaaattat 19103586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 99 - 325
Target Start/End: Complemental strand, 26179417 - 26179191
Alignment:
99 tttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaat 198  Q
    ||||||||||| |||||| ||||  | |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
26179417 tttgatccccattgtagtgttacttaatttttcataatcactttcaagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaac 26179318  T
199 attggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgtaa 298  Q
    ||||||||||||||||||| | ||| ||| ||||    ||||||||||||||| |||||||||||||||||||| |||||||| |||| |||||  ||||    
26179317 attggttcaaaataggcagcggcaggattctttgcatgtaaccaatcaggaagttgcagaggagtcatctcaattgtatgaggaaaacaaggaattgtaa 26179218  T
299 atttctgcgtatcagaaactaaattat 325  Q
    ||||||| |||||||||||||||||||    
26179217 atttctgtgtatcagaaactaaattat 26179191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 99 - 325
Target Start/End: Complemental strand, 26155537 - 26155311
Alignment:
99 tttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaat 198  Q
    |||||||||||  ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |     
26155537 tttgatccccatggtagtgttactaagtttttcataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctgtgattcataa 26155438  T
199 attggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgtaa 298  Q
    |||| |||||||||||||||| || || | | ||| |||| ||||  ||||||||||||||||||||| ||||| |||||||||||||||||||  ||||    
26155437 attgcttcaaaataggcagtggcaaaactctgtgtccttatccaaaaaggaagctgcagaggagtcatttcaattgtatgaggcaaaccaggaattgtaa 26155338  T
299 atttctgcgtatcagaaactaaattat 325  Q
    |||| || |||||||||||||||||||    
26155337 atttgtgtgtatcagaaactaaattat 26155311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 98 - 325
Target Start/End: Complemental strand, 26088117 - 26087889
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 197  Q
    |||||||||||| ||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
26088117 atttgatccccattgtagtgcttccaagtttttcataatcactttccagttcatgaaaactattgtatagtgttccataactaattttctctgattcaaa 26088018  T
198 tattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgca-gaggagtcatctcaatggtatgaggcaaaccaggaaccgt 296  Q
     |||| |||||||||||||||| |||  || ||||| |||||||||  ||||||||||| |||||||||||||||| | |||||| || |||||||| ||    
26088017 aattgtttcaaaataggcagtggcaggtttctttgtccttaaccaaaaaggaagctgcaggaggagtcatctcaattgaatgagggaatccaggaacagt 26087918  T
297 aaatttctgcgtatcagaaactaaattat 325  Q
    ||||||||| ||||||||||| |||||||    
26087917 aaatttctgtgtatcagaaaccaaattat 26087889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 98 - 325
Target Start/End: Complemental strand, 26111905 - 26111677
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 197  Q
    |||||||||||| ||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
26111905 atttgatccccattgtagtgcttccaagtttttcataatcactttccagttcatgaaaactattgtatagtgttccataactaattttctctgattcaaa 26111806  T
198 tattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgca-gaggagtcatctcaatggtatgaggcaaaccaggaaccgt 296  Q
     |||| |||||||||||||||| |||  || ||||| |||||||||  ||||||||||| |||||||||||||||| | |||||| || |||||||| ||    
26111805 aattgtttcaaaataggcagtggcaggtttctttgtccttaaccaaaaaggaagctgcaggaggagtcatctcaattgaatgagggaatccaggaacagt 26111706  T
297 aaatttctgcgtatcagaaactaaattat 325  Q
    ||||||||| ||||||||||| |||||||    
26111705 aaatttctgtgtatcagaaaccaaattat 26111677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 98 - 325
Target Start/End: Complemental strand, 26128902 - 26128675
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 197  Q
    ||||||||||||| ||||| |||| ||  ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |    
26128902 atttgatccccaaggtagtgttacaaatgttttcataatcactttccagttcatgaaaactattgcatagtgttccataacttcttttctgtgattcata 26128803  T
198 tattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgta 297  Q
     |||| |||||||||||||||| || || | | ||  |||| ||||  ||||||||||||||||||||||||||| |||||||||||||||||||  |||    
26128802 aattgcttcaaaataggcagtggcaaaactctgtgaccttatccaaaaaggaagctgcagaggagtcatctcaattgtatgaggcaaaccaggaattgta 26128703  T
298 aatttctgcgtatcagaaactaaattat 325  Q
    |||||||| |||||||||||||||||||    
26128702 aatttctgtgtatcagaaactaaattat 26128675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 98 - 302
Target Start/End: Complemental strand, 26186577 - 26186373
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 197  Q
    |||||||||||||  |||| |||| |||||||  ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
26186577 atttgatccccaagatagtgttactaagttttttataatcactctccagttcatgaaaactattgtatagtgttccgtaactttttttctctgattcaaa 26186478  T
198 tattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgta 297  Q
     ||||||| | |||| ||||||  ||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  |||    
26186477 aattggtttataatatgcagtggtagaatgatttgtccctaaccaatcaggaagctgcagaggagtcatctcaatagtatgaggcaaaccatgaatagta 26186378  T
298 aattt 302  Q
    |||||    
26186377 aattt 26186373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 98 - 325
Target Start/End: Complemental strand, 26191600 - 26191373
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 197  Q
    |||||||||||  |||||| |||| ||||||  |||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||| |||||||||| |    
26191600 atttgatcccccttgtagtattacaaagtttctcatattcactttctagttcatgaaaactattgtatagtgtgccatagcttttttcctctgattcata 26191501  T
198 tattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgta 297  Q
     ||||||||||||||||| ||| ||| ||| |||   |||||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||  |||    
26191500 aattggttcaaaataggctgtggcaggattcttttcccttaaccaatcaggaatctgcagaggggtcatctcaatggtatgaggaaaactaggaatagta 26191401  T
298 aatttctgcgtatcagaaactaaattat 325  Q
    |||||||| |||||||||||||||||||    
26191400 aatttctgtgtatcagaaactaaattat 26191373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 98 - 325
Target Start/End: Complemental strand, 26302137 - 26301904
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccata-------acttcttttctctg 190  Q
    ||||||| |||| ||| || | || |||||| |||||||||||||| ||||||||||||||||||||||||||||||||       | ||||||  || |    
26302137 atttgattcccattgttgtttgactaagtttcacataatcactttcaagttcatgaaaactattgtatagtgttccatagggtcagaattctttcttc-g 26302039  T
191 attcaaatattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccagg 290  Q
    ||||||| | |  ||||||| |||||| | ||||||| ||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||     
26302038 attcaaacacttattcaaaaaaggcagggtcagaattctttgtccttaaccaatcaggaagctccagaggaatcatctcaattgtatgaggcaaaccagc 26301939  T
291 aaccgtaaatttctgcgtatcagaaactaaattat 325  Q
    ||  ||||||||||| ||||||||||| |||||||    
26301938 aatagtaaatttctgtgtatcagaaaccaaattat 26301904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 98 - 325
Target Start/End: Complemental strand, 26223867 - 26223640
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 197  Q
    |||||||||| | |||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||    
26223867 atttgatccctattgtagttttaccaagtttctcataatcactttctagttcatgaaaactattgtatagtgttccaaagcttcttttctctgattcaaa 26223768  T
198 tattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgta 297  Q
     ||||   |||||    | ||  | ||| | ||    || | ||||||||  ||||||| ||| ||||||||||| ||||||||||||| |||||| |||    
26223767 cattgcaccaaaagcacctgttgctgaagtcttaaccctaatccaatcagctagctgcaaaggtgtcatctcaattgtatgaggcaaacaaggaacagta 26223668  T
298 aatttctgcgtatcagaaactaaattat 325  Q
    |||||||| |||||||||||||||||||    
26223667 aatttctgtgtatcagaaactaaattat 26223640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 325
Target Start/End: Complemental strand, 26204229 - 26204002
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 197  Q
    |||||||||| | |||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||    
26204229 atttgatccctattgtagttttaccaagtttctcataatcactttctagttcatgaaaactattgtatagtgttccaaagcttcttttctctgattcaaa 26204130  T
198 tattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgta 297  Q
     ||||   ||||     | ||  | ||| | ||    || | ||||||||  ||||||| ||| ||||||||||| ||||||||||||| |||||| |||    
26204129 cattgcaccaaatgcacctgttgctgaagtcttaaccctaatccaatcagctagctgcaaaggtgtcatctcaattgtatgaggcaaacaaggaacggta 26204030  T
298 aatttctgcgtatcagaaactaaattat 325  Q
    |||||||| |||||||||||||||||||    
26204029 aatttctgtgtatcagaaactaaattat 26204002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 131 - 325
Target Start/End: Complemental strand, 26297747 - 26297553
Alignment:
131 cataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaatattggttcaaaataggcagtgacagaattatt 230  Q
    ||||||||||||| |||||||||||||| ||||||||||  ||||| ||||||| | |||||||| | ||||||||||||  ||| || | ||  || ||    
26297747 cataatcactttcaagttcatgaaaactgttgtatagtgacccatagcttctttccgctgattcatacattggttcaaaaatggccgtcatagcgttgtt 26297648  T
231 tgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgtaaatttctgcgtatcagaaactaaattat 325  Q
    |   |||  ||||| | ||||||||||| | |||||||||||||||||||| |||| |||||  ||||||||||| || ||||||||||||||||    
26297647 ttccctttcccaattatgaagctgcagacgtgtcatctcaatggtatgaggtaaacaaggaattgtaaatttctgtgtttcagaaactaaattat 26297553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 325
Target Start/End: Complemental strand, 26251145 - 26250953
Alignment:
133 taatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaatattggttcaaaataggcagtgacagaattatttg 232  Q
    |||||| |||| |||||||||||||| ||||||||||  ||||| |||||||   |||||||| | ||||||||||||  |||  | | || ||| |||     
26251145 taatcattttcaagttcatgaaaactgttgtatagtgacccatagcttctttctgctgattcatacattggttcaaaaatggccttcatagcattgtttt 26251046  T
233 ttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgtaaatttctgcgtatcagaaactaaattat 325  Q
        |  |||||||  ||| ||| || | ||||||||||| |||||||| |||| |||||  ||||||||||| |||||||||||||||||||    
26251045 ccaattcccaatcacaaagttgctgacgggtcatctcaattgtatgaggtaaacaaggaattgtaaatttctgtgtatcagaaactaaattat 26250953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 325
Target Start/End: Complemental strand, 26242732 - 26242505
Alignment:
98 atttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaa 197  Q
    ||||||| || | |||||| |||| ||| ||  ||||||||||||| |||||||||||||| ||||||||||  ||||| ||||||| | ||||| || |    
26242732 atttgattccgattgtagttttactaagattctcataatcactttcaagttcatgaaaactgttgtatagtgacccatagcttctttccgctgatacata 26242633  T
198 tattggttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgta 297  Q
      |||||||||||  ||| || | |  |||  ||   |||  ||| |||  ||| || ||| | ||||||||||  |||||||| |||| |||||  |||    
26242632 atttggttcaaaaatggccgtcataacattggtttccctttcccagtcacaaagttgaagacgggtcatctcaactgtatgaggtaaacaaggaattgta 26242533  T
298 aatttctgcgtatcagaaactaaattat 325  Q
    |||||||| |||||||||||||||||||    
26242532 aatttctgtgtatcagaaactaaattat 26242505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 103 - 322
Target Start/End: Complemental strand, 44903580 - 44903361
Alignment:
103 atccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaactattgtatagtgttccataacttcttttctctgattcaaatattg 202  Q
    ||||||| |||||| |||| || |||  ||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||  ||| |||||||| ||||    
44903580 atccccattgtagttttactaactttctcataatcactttcaagttcatgaaaactattgcatattgtcccataacttcttgcctccgattcaaaaattg 44903481  T
203 gttcaaaataggcagtgacagaattatttgttcttaaccaatcaggaagctgcagaggagtcatctcaatggtatgaggcaaaccaggaaccgtaaattt 302  Q
    ||||||||||||| ||| ||| |||  | || || | ||||||  ||||||||||| |  |||||||||||||||||||||||| |||||  ||||| ||    
44903480 gttcaaaataggctgtggcagcatttgtagtcctcacccaatcgcgaagctgcagacggctcatctcaatggtatgaggcaaacaaggaatagtaaactt 44903381  T
303 ctgcgtatcagaaactaaat 322  Q
    ||| ||||||||||||||||    
44903380 ctgtgtatcagaaactaaat 44903361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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