View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_25 (Length: 298)
Name: NF2460_low_25
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_25 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 2725544 - 2725830
Alignment:
| Q |
12 |
caatatggaaaagtatatgatgtacttacgcacaaatagcatgtccaacttcatggtaagccaccaaaattttgctcttgccatctgtcatcgcggttcc |
111 |
Q |
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| T |
2725544 |
caatatggaaaagtatatgatgtacttacgcacaaatagcatgtccaacttcatggtaagccaccaaaattttgcacttgccatctgtcatcgtggttcc |
2725643 |
T |
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| Q |
112 |
ttccatgcctgcgacaattcgatcaatagagtcgtcgatttctttcattgtgatcttctctttttgccttcgaccggctagaatggctgcttcattcatg |
211 |
Q |
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| T |
2725644 |
ttccatgcctgcgacaattcgatcaatagagtcgtcgatttctttcattgtgatcttctctttttgccttcgaccagctagaatggctgcttcattcatg |
2725743 |
T |
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| Q |
212 |
aggtttgccaggtccgcaccgctgaatcctggagttctcatggcaatgacaccgagtgagatatctttgtcaagcttcttgttgtta |
298 |
Q |
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| T |
2725744 |
aggtttgccaggtccgcaccgctgaatcctggagttctcatggcaatgacaccgagtgagatatctttgtcaagcttcttgttgtta |
2725830 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 38679554 - 38679674
Alignment:
| Q |
36 |
cttacgcacaaatagcatgtccaacttcatggtaagccaccaaaattttgctcttgccatctgtcatcgcggttccttccatgcctgcgacaattcgatc |
135 |
Q |
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| T |
38679554 |
cttacccacaaatggcatgcccaacttcatgatatgccactaaacttttgctcttcccatcggtcattaatgttccttccattccagcgacaatcctatc |
38679653 |
T |
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| Q |
136 |
aatagagtcgtcgatttcttt |
156 |
Q |
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| T |
38679654 |
aatagaatcgtcaatctcttt |
38679674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 15380343 - 15380246
Alignment:
| Q |
44 |
caaatagcatgtccaacttcatggtaagccaccaaaattttgctcttgccatctgtcatcgcggttccttccatgcctgcgacaattcgatcaataga |
141 |
Q |
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| T |
15380343 |
caaatggcatgcccaacttcatgatatgccactaaacttttgctcttcccgtctgtcatcacggtaccttccattccagccacaatcctatcaataga |
15380246 |
T |
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