View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_low_28 (Length: 292)

Name: NF2460_low_28
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_low_28
NF2460_low_28
[»] chr3 (1 HSPs)
chr3 (1-292)||(2179587-2179879)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 2179587 - 2179879
Alignment:
Q  1 ttaaaacctaagtaactaaattactctaatttgaggaggatgagacaatgcatctactcaaaatatctctcnnnnnnnn-cttcagaaaaatagtactaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  2179587 ttaaaacctaagtaactaaattactctaatttgaggaggatgagacaatgcatctactcaaaatatctctctttttttttcttcagaaaaatagtactaa 2179686  T
Q  100 atggcagtaacacaattctctcttacatttttattgtgcaaggtagactgacaaatcccatgaaaggaatattagagaaagtgttcacagttgttgaagt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2179687 atggcagtaacacaattctctcttacatttttattgtgcaaggtaaactgacaaatcccatgaaaggaatattagagaaagtgttcacagttgttgaagt 2179786  T
Q  200 ggctatggcggctaaacaattgaagctcctcgcaggtcgcagcatcgaaaccagatggcatgccaacattattttatcatcagttccatgcat 292  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2179787 ggctatggcggctaagcaattgaagctcctcgcaggtcgcagcatcgaaaccagatggcatgccaacattattttatcatcagttccatgcat 2179879  T

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