View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_3 (Length: 576)
Name: NF2460_low_3
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_3 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 104 - 576
Target Start/End: Complemental strand, 11585977 - 11585515
Alignment:
| Q |
104 |
gctagcagcactggctttgactgagctttgctatcttgttttatcaattggagggattggaggtacgtaataaaaatctaatgtacgagttaaattttaa |
203 |
Q |
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| T |
11585977 |
gctagtagcactggctttgactgagcattgctatcttgttttatcaattggagggatttcaggtacgtaataaaaatctaatgtacaagttaaattttaa |
11585878 |
T |
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| Q |
204 |
agagaatctgatgatattttattcaatatttatatttttctaggagctgtcagaggtgttttgggtattagttaggttggaaaatttttcagtggaattt |
303 |
Q |
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| T |
11585877 |
agagaatctgatgataatttattcaatatttctatttttctagaag----------tgttttgggtattagtgaggatggaaaatttttcagtggaattt |
11585788 |
T |
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| Q |
304 |
cctttcaatgctcaagtccttttaatattggaaacaaaattaaggtaaattaatttagtattagatgtaagggttttatgtaaggattttatttgatgtc |
403 |
Q |
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| T |
11585787 |
cctttcaatgctcaagtccttttgatattggaaacaaaattaaggtaaattaatttagtactagatgtaagggttttatgtaaggattttatttgatgtt |
11585688 |
T |
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| Q |
404 |
gcaaggagtcctaaatcctaagatgtgttgaaaacgtgtagattggagattttgaaggtgaggttatggaaattgaaatattcagaaccaaggtgttaat |
503 |
Q |
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| T |
11585687 |
gcaaggagtcctaaatcctaaaatgtgttgaaaacgtgtagattggagatattgaaggtgaggttatggaaattggaatattcagaaccaaggtattaac |
11585588 |
T |
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| Q |
504 |
atctcagaatttgttcatacaaatatcaaattctaatttttctagtaaggtatttgtgttatttatagttaat |
576 |
Q |
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| T |
11585587 |
atctcagaatttgctcatacaaataccaaatttcaatttttctagtaaggtatttgtgttatttgtagttaat |
11585515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 104 - 423
Target Start/End: Complemental strand, 11589384 - 11589074
Alignment:
| Q |
104 |
gctagcagcactggctttgactgagctttgctatcttgttttatcaattggagggattggaggtacgtaataaaaatctaatgtacgagttaaattttaa |
203 |
Q |
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| T |
11589384 |
gctagcagcactggctttgacatatcattgctatcttgttttatcaattggagg---------tacgtaataaaaatctaatgtgcgagttaaattttaa |
11589294 |
T |
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| Q |
204 |
agagaatctgatgatattttattcaatatttatatttttctaggagctgtcagaggtgttttgggtattagttaggttggaaaatttttcagtggaattt |
303 |
Q |
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| T |
11589293 |
agagaatttgattataatttattcaatatttctatttttctatgaactgtcagtggtgctttgggtattagtgaggttggaaattttttcagtggaattt |
11589194 |
T |
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| Q |
304 |
cctttcaatgctcaagtccttttaatattggaaacaaaattaaggtaaattaatttagtattagatgtaagggttttatgtaaggattttatttgatgtc |
403 |
Q |
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| T |
11589193 |
cctttcaatgctcaagtccttttgaaattgaaaacaaaattaaggtaaattaatttagtactagatgtatgggttttatgtaaggattttatttgatgtc |
11589094 |
T |
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| Q |
404 |
gcaaggagtcctaaatccta |
423 |
Q |
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| T |
11589093 |
gcaaggagtcctaaatccta |
11589074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 426 - 576
Target Start/End: Complemental strand, 11587753 - 11587603
Alignment:
| Q |
426 |
atgtgttgaaaacgtgtagattggagattttgaaggtgaggttatggaaattgaaatattcagaaccaaggtgttaatatctcagaatttgttcatacaa |
525 |
Q |
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| T |
11587753 |
atgtgttgaaaacatgtagattggagatattgaaggtgaggttatggaaattggaatattcagaatcaaggtgttaacatctcagaatttgctcatacaa |
11587654 |
T |
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| Q |
526 |
atatcaaattctaatttttctagtaaggtatttgtgttatttatagttaat |
576 |
Q |
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| T |
11587653 |
ataccaaatttcaatttttctagtaaggtatttgtgttatttgtagttaat |
11587603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 11919787 - 11919712
Alignment:
| Q |
142 |
ttttatcaattggagggattggaggtacgtaataaaaatctaatgtacgagttaaattttaaagagaatctgatgata |
219 |
Q |
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| T |
11919787 |
ttttctcaattggagcgattggaggtacgtaataaaaatctaatatacg-gttaaatgttaga-agaatatgatgata |
11919712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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