View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_30 (Length: 279)
Name: NF2460_low_30
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 44072902 - 44073136
Alignment:
| Q |
10 |
caattatagtagacctgttttgttatcctcctatttcccactacccaaggtttgacatcaactgaatgcttttatgttagcagtcaaccaaactgtgaga |
109 |
Q |
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| T |
44072902 |
caattattgtagacctgttttgttatcctcctatttcccactgcccaaggtttgacatcaactgaatgcttttatgttagcagtcaaccaaactgtgaga |
44073001 |
T |
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| Q |
110 |
caagaaaatggaatgtcatgggggaaataagagttggaatattttcactggaagatattcctattggaactgaactggcatatgactataattttgaatg |
209 |
Q |
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| T |
44073002 |
caagaaaatggaatgtcatgggggaaataagagttggaatatttgcactggaagatattcctattggaactgaactggcatatgactataattttgaatg |
44073101 |
T |
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| Q |
210 |
gtttggaggtgcaaaggttcgctgcctctgtggtg |
244 |
Q |
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| T |
44073102 |
gtttggaggtgcaaaggttcgctgcctctgtggtg |
44073136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 44283085 - 44282859
Alignment:
| Q |
18 |
gtagacctgttttgttatcctcctatttcccactacccaaggtttgacatcaactgaatgcttttatgttagcagtcaaccaaactgtgagacaagaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44283085 |
gtagacctgttttgttatcctcctatttcccactgcccaaggtttgacatcaactgaatgcttttatgtttgcagtcaaccaaactgtgagacaagaaaa |
44282986 |
T |
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| Q |
118 |
tggaatgtcatgggggaaataagagttggaatattttcactggaagatattcctattggaactgaactggcatatgactataattttgaatggtttggag |
217 |
Q |
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| T |
44282985 |
tggaatgtcatgggggaaataagagttggaatatttgcactggaaaatattcctattggaactgaactggcatatgactataattttgaatggtttggag |
44282886 |
T |
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| Q |
218 |
gtgcaaaggttcgctgcctctgtggtg |
244 |
Q |
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| T |
44282885 |
gtgcaaaggttcgctgcctctgtggtg |
44282859 |
T |
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