View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2460_low_31 (Length: 278)
Name: NF2460_low_31
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 37030590 - 37030828
Alignment:
| Q |
30 |
ataaaaaatgaatcaagttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttc |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37030590 |
ataaaaaatgaatcaagttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttc |
37030689 |
T |
|
| Q |
130 |
agtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37030690 |
agtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgcc |
37030789 |
T |
|
| Q |
230 |
ttggtccaagccgctttcttcttagccaactcagaatta |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37030790 |
ttggtccaagccgctttcttcttagccaactcagaatta |
37030828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 32592694 - 32592496
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
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| T |
32592694 |
actaaccttggtttcatactgaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
32592595 |
T |
|
| Q |
170 |
aactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta |
268 |
Q |
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||||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
32592594 |
aactcagcttcccttagagccacagctttagcagcttcgacttcagccacttgagccgccttagtccaagccgctttcttcttcgccaactcagaatta |
32592496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 31527272 - 31527388
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
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| T |
31527272 |
actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
31527371 |
T |
|
| Q |
170 |
aactcagcttcccttag |
186 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
31527372 |
aactcagcttcccttag |
31527388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 51824272 - 51824353
Alignment:
| Q |
52 |
tatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagta |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||| |
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|
| T |
51824272 |
tatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagta |
51824353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 51824717 - 51824843
Alignment:
| Q |
138 |
tcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtcca |
237 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||| ||||||||||||||||| ||||| || ||||| |||| |||||| ||||| ||||| ||||| |
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| T |
51824717 |
tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca |
51824816 |
T |
|
| Q |
238 |
agccgctttcttcttagccaactcaga |
264 |
Q |
| |
|
||||||||||||| | ||||||||||| |
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|
| T |
51824817 |
agccgctttcttcatcgccaactcaga |
51824843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 49188058 - 49188317
Alignment:
| Q |
12 |
attatttaatttcagcaaataaaaaatgaatcaagttatatatat--ttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49188058 |
attatttaatttcagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctaag |
49188157 |
T |
|
| Q |
109 |
gaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcg |
208 |
Q |
| |
|
|| || ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
49188158 |
taaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcg |
49188257 |
T |
|
| Q |
209 |
acttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49188258 |
acttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta |
49188317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 51 - 268
Target Start/End: Original strand, 49202944 - 49203159
Alignment:
| Q |
51 |
atatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcat |
150 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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|
| T |
49202944 |
atatatttgcat--attaaactaaccttagtttcatattgaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaaagcattcat |
49203041 |
T |
|
| Q |
151 |
cctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttc |
250 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||||||| || |||||| |
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|
| T |
49203042 |
cctttcaacttcaccttgtaactcagcatcccttagagccacggccttcttcgcctcaacttcagccacctgagccgccttagtccaagctgccttcttc |
49203141 |
T |
|
| Q |
251 |
ttagccaactcagaatta |
268 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
49203142 |
ttagccaactcagaatta |
49203159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 47 - 268
Target Start/End: Original strand, 49191832 - 49192053
Alignment:
| Q |
47 |
ttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcat |
146 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||| |
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|
| T |
49191832 |
ttatatatatttgcatgtactaaactaaccttggtttcatattgaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaaagcat |
49191931 |
T |
|
| Q |
147 |
tcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgcttt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| || || || ||||| ||||| ||||| ||||||||||| |||||||||||||| |
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|
| T |
49191932 |
tcatcctctcaacttcaccttgtaactcagcatcccttagagcgacggctttggcagcctcaacttcggccacttgagccgccttagtccaagccgcttt |
49192031 |
T |
|
| Q |
247 |
cttcttagccaactcagaatta |
268 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
49192032 |
cttcttagccaattcagaatta |
49192053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 70 - 268
Target Start/End: Original strand, 49212972 - 49213170
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||||| |||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
49212972 |
actaaccttagtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgc |
49213071 |
T |
|
| Q |
170 |
aactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta |
268 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || |||||||| |||||| |
|
|
| T |
49213072 |
aactcagcttcccttagagccacagccttcttcgcctcaacttcagccacctgagccgccttggtccaagcagccttctttttggccaactccgaatta |
49213170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 268
Target Start/End: Original strand, 49208132 - 49208330
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
49208132 |
actaaccttagtgtcatattcaacactagctttgctaaggaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgc |
49208231 |
T |
|
| Q |
170 |
aactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta |
268 |
Q |
| |
|
||||||||||||||||| ||| || || ||||| | |||||||| ||||||||| | |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
49208232 |
aactcagcttcccttagagccacggctttagcagcctcaagctcagccacttgagccgccattgtccaagcagctttcttcttagccaactcggaatta |
49208330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 70 - 268
Target Start/End: Original strand, 26756496 - 26756696
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaa---ggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcacct |
166 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||| ||||||| | ||||||||| ||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
26756496 |
actaaccttggtttcatat-gtacactagctttactaattaggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaacctcacct |
26756594 |
T |
|
| Q |
167 |
tgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaat |
266 |
Q |
| |
|
|| |||||||||||||| || |||||| || ||||| |||||||| || ||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
26756595 |
tgcaactcagcttccctaagggccacagctttagcagcctcaacttcagcgacttgagccgccttagtccaagccgctttcttcttagtcaactcggaat |
26756694 |
T |
|
| Q |
267 |
ta |
268 |
Q |
| |
|
|| |
|
|
| T |
26756695 |
ta |
26756696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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