View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_low_33 (Length: 270)

Name: NF2460_low_33
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_low_33
NF2460_low_33
[»] chr7 (1 HSPs)
chr7 (96-267)||(15913044-15913215)
[»] chr4 (5 HSPs)
chr4 (121-250)||(38254107-38254236)
chr4 (121-261)||(38214954-38215097)
chr4 (123-170)||(38227379-38227426)
chr4 (203-261)||(38243928-38243984)
chr4 (123-170)||(38248994-38249041)
[»] chr6 (1 HSPs)
chr6 (123-170)||(17434509-17434556)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 96 - 267
Target Start/End: Complemental strand, 15913215 - 15913044
Alignment:
Q  96 tgtattttctttgaaatatgttctttcacaagaacatgatcagagctttgaagcatcatgtggctatcattttc--tctgagtggcgtggttgctttgtt 193  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | || |||||||| ||||||||||    
T  15913215 tgtattttctttgaaatatgttctttcacaagaacatgatcaaagctttgaagcatcatgtggctatcattttctgtgtgtgtggcgtgtttgctttgtt 15913116  T
Q  194 gttattttacaacagcccaatgatagaaataggtttcatggagagaggtataggattaccaacttcatgagcta 267  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||| |||||    
T  15913115 gttattttacaacagcccaatgatggaaataggtttcatg--gagaggtataggattaccaacttcatcagcta 15913044  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 38254107 - 38254236
Alignment:
Q  121 tcacaagaacatgatcagagctttgaagcatcatgtggctatcattttctctgagtg--gcgtggttgctttgttgttattttacaacagcccaatgata 218  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||| || |||   | || || ||||| || ||| || ||||| |||||||||     
T  38254107 tcacaagaacatgatcagagttttgtagcatcatgtggctatcattttctgtgtgtgtaacatgttttctttgatgatatcttccaacaacccaatgatg 38254206  T
Q  219 gaaataggtttcatggagagaggtataggatt 250  Q
    || ||| ||||||||  |||||||||||||||    
T  38254207 gagataagtttcatg--gagaggtataggatt 38254236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 261
Target Start/End: Original strand, 38214954 - 38215097
Alignment:
Q  121 tcacaagaacatgatcag---agctttgaagcatcatgtggctatcattttctctgagtg--gcgtggttgctttgttgttattttacaacagcccaatg 215  Q
    ||||||||||||||||||   || ||||||||||| ||||||||||||||||| || |||   | || || ||||| || ||| || |||||||||||||    
T  38214954 tcacaagaacatgatcagcagagttttgaagcatcctgtggctatcattttctgtgtgtgtaacatgttttctttgatgatatcttccaacagcccaatg 38215053  T
Q  216 atagaaataggtttcatggagagaggtataggattaccaacttcat 261  Q
    ||  | ||| ||||||||  ||| ||||||||||||||| ||||||    
T  38215054 atgaagataagtttcatg--gaggggtataggattaccatcttcat 38215097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 38227379 - 38227426
Alignment:
Q  123 acaagaacatgatcagagctttgaagcatcatgtggctatcattttct 170  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  38227379 acaagaacatgatcagagttttgaagcatcatgtggctaacatcttct 38227426  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 38243928 - 38243984
Alignment:
Q  203 caacagcccaatgatagaaataggtttcatggagagaggtataggattaccaacttcat 261  Q
    ||||| ||||||||| || ||| ||||||||||||  ||||||||||||||||||||||    
T  38243928 caacaccccaatgatggagataagtttcatggaga--ggtataggattaccaacttcat 38243984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 38248994 - 38249041
Alignment:
Q  123 acaagaacatgatcagagctttgaagcatcatgtggctatcattttct 170  Q
    ||||||||||||||| || |||||||||||||||||||| ||| ||||    
T  38248994 acaagaacatgatcatagttttgaagcatcatgtggctaccatcttct 38249041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 17434509 - 17434556
Alignment:
Q  123 acaagaacatgatcagagctttgaagcatcatgtggctatcattttct 170  Q
    |||||||||| ||||||| ||||||||||| | |||||||||||||||    
T  17434509 acaagaacataatcagagttttgaagcatcctatggctatcattttct 17434556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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