View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2460_low_35 (Length: 262)

Name: NF2460_low_35
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2460_low_35
NF2460_low_35
[»] scaffold0177 (3 HSPs)
scaffold0177 (3-189)||(18553-18739)
scaffold0177 (1-65)||(18593-18657)
scaffold0177 (40-107)||(18548-18615)
[»] chr4 (1 HSPs)
chr4 (93-189)||(15473391-15473487)
[»] chr8 (2 HSPs)
chr8 (40-189)||(21290192-21290326)
chr8 (1-47)||(21290277-21290323)
[»] scaffold0422 (1 HSPs)
scaffold0422 (112-189)||(13559-13636)
[»] chr1 (5 HSPs)
chr1 (112-189)||(19168514-19168591)
chr1 (40-103)||(19168457-19168520)
chr1 (75-189)||(20881952-20882066)
chr1 (112-189)||(23068784-23068861)
chr1 (1-61)||(19168460-19168520)
[»] scaffold1078 (3 HSPs)
scaffold1078 (97-189)||(2599-2691)
scaffold1078 (1-47)||(2560-2606)
scaffold1078 (40-86)||(2557-2603)
[»] scaffold0080 (1 HSPs)
scaffold0080 (112-189)||(1195-1272)
[»] chr3 (2 HSPs)
chr3 (112-186)||(17008078-17008152)
chr3 (112-186)||(17018884-17018958)
[»] scaffold0752 (1 HSPs)
scaffold0752 (152-189)||(3844-3881)
[»] chr6 (3 HSPs)
chr6 (156-189)||(11237488-11237521)
chr6 (152-189)||(19285414-19285451)
chr6 (75-189)||(18544948-18545062)
[»] scaffold0414 (1 HSPs)
scaffold0414 (155-189)||(5372-5406)
[»] scaffold0007 (1 HSPs)
scaffold0007 (75-189)||(57409-57523)
[»] chr5 (1 HSPs)
chr5 (112-186)||(13525075-13525149)
[»] scaffold0537 (1 HSPs)
scaffold0537 (160-189)||(2904-2933)


Alignment Details
Target: scaffold0177 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 18553 - 18739
Alignment:
Q  3 caagtcgttcctgaacacacttctgaacaaaacccctctgaacaagtcgttcctgaacacacttctgaacgaaacccctctgaataatctgttcctgaac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18553 caagtcgttcctgaacacacttctgaacaaaacccctctgaacaagtcgttcctgaacacacttctgaacgaaacccctctgaataatctgttcctgaac 18652  T
Q  103 acactatttctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18653 acactatttctgaacaaattgcttatgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 18739  T

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Target: scaffold0177; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18593 - 18657
Alignment:
Q  1 aacaagtcgttcctgaacacacttctgaacaaaacccctctgaacaagtcgttcctgaacacact 65  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||   |||||||||||||||    
T  18593 aacaagtcgttcctgaacacacttctgaacgaaacccctctgaataatctgttcctgaacacact 18657  T

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Target: scaffold0177; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 18548 - 18615
Alignment:
Q  40 ctgaacaagtcgttcctgaacacacttctgaacgaaacccctctgaataatctgttcctgaacacact 107  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| ||   |||||||||||||||    
T  18548 ctgatcaagtcgttcctgaacacacttctgaacaaaacccctctgaacaagtcgttcctgaacacact 18615  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 15473391 - 15473487
Alignment:
Q  93 gttcctgaacacactatttctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15473391 gttcctgaacacactattcctgaacaaattgcttctgagcaacccacctcagaaaccttatctgaatcagaacctatgatcacatcagatgtctctg 15473487  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 21290326 - 21290192
Alignment:
Q  40 ctgaacaagtcgttcctgaacacacttctgaacgaaacccctctgaataatctgttcctgaacacactatttctgaacaaattgcttctgagcgacccac 139  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||               |||||||||||||| ||||||    
T  21290326 ctgaacaagttgttcctgaacacacttctgaacaaaacccctctgaacaatctgttcttgaaca---------------aattgcttctgagcaacccac 21290242  T
Q  140 ctcagaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    || || |||||||||||||||| ||||||||||| |||||||||||||||    
T  21290241 cttaggaaccttatctgaatcataacctatgatcacatcagatgtctctg 21290192  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21290323 - 21290277
Alignment:
Q  1 aacaagtcgttcctgaacacacttctgaacaaaacccctctgaacaa 47  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  21290323 aacaagttgttcctgaacacacttctgaacaaaacccctctgaacaa 21290277  T

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Target: scaffold0422 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 13636 - 13559
Alignment:
Q  112 ctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    |||||||||||| || ||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  13636 ctgaacaaattgtttatgagcaaccaaccttagaaaccctatctgaatcagaacctatgatctcatcagatgtctctg 13559  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 19168514 - 19168591
Alignment:
Q  112 ctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    |||||||||||| |||||||| ||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  19168514 ctgaacaaattgtttctgagcaaccaaccctagaaaccttatctcaatcagaacctatgatctcatcagatgtctctg 19168591  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 19168457 - 19168520
Alignment:
Q  40 ctgaacaagtcgttcctgaacacacttctgaacgaaacccctctgaataatctgttcctgaaca 103  Q
    |||||||||| |||| ||||  | ||||||||| ||||||||||||| ||||||||||||||||    
T  19168457 ctgaacaagttgttcttgaaatctcttctgaacaaaacccctctgaacaatctgttcctgaaca 19168520  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 20881952 - 20882066
Alignment:
Q  75 aacccctctgaataatctgttcctgaacacactatttctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatct 174  Q
    |||| ||||||| ||| ||||| |||||   || || ||||||||| || |||||||| ||| ||||   |||||  ||| ||| |||||||||||||||    
T  20881952 aacctctctgaacaatttgttcttgaactatctgttcctgaacaaactgtttctgagcaacctacctttcaaacccaatcagaaccagaacctatgatct 20882051  T
Q  175 catcagatgtctctg 189  Q
    |||||||||||||||    
T  20882052 catcagatgtctctg 20882066  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 23068861 - 23068784
Alignment:
Q  112 ctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    ||||||||| || |||||||| ||| |||  ||||||   ||||||| ||||||| ||||||||||||||||||||||    
T  23068861 ctgaacaaactgtttctgagcaaccaaccctagaaactcaatctgaaccagaaccaatgatctcatcagatgtctctg 23068784  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19168460 - 19168520
Alignment:
Q  1 aacaagtcgttcctgaacacacttctgaacaaaacccctctgaacaagtcgttcctgaaca 61  Q
    ||||||| |||| ||||  | ||||||||||||||||||||||||||   |||||||||||    
T  19168460 aacaagttgttcttgaaatctcttctgaacaaaacccctctgaacaatctgttcctgaaca 19168520  T

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Target: scaffold1078 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold1078
Description:

Target: scaffold1078; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 2599 - 2691
Alignment:
Q  97 ctgaacacactatttctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    |||||||  ||||| ||||||||| || |||||||| ||| |||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  2599 ctgaacaatctattcctgaacaaactgtttctgagcaaccaaccctaaaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 2691  T

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Target: scaffold1078; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2560 - 2606
Alignment:
Q  1 aacaagtcgttcctgaacacacttctgaacaaaacccctctgaacaa 47  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  2560 aacaagttgttcctgaactcacttctgaacaaaacccctctgaacaa 2606  T

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Target: scaffold1078; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 2557 - 2603
Alignment:
Q  40 ctgaacaagtcgttcctgaacacacttctgaacgaaacccctctgaa 86  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||    
T  2557 ctgaacaagttgttcctgaactcacttctgaacaaaacccctctgaa 2603  T

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Target: scaffold0080 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 1272 - 1195
Alignment:
Q  112 ctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    |||||||||||| |||||||| ||| || |  ||||||  ||| ||| ||||||||||||||||||||||||||||||    
T  1272 ctgaacaaattgtttctgagcaacctacatttgaaacccaatcagaaccagaacctatgatctcatcagatgtctctg 1195  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 17008152 - 17008078
Alignment:
Q  112 ctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtct 186  Q
    ||||||| | || |||||||| ||| |||  |||||| ||||||||| ||||||| |||||||||||||||||||    
T  17008152 ctgaacacactggttctgagcaaccaaccctagaaactttatctgaaccagaaccaatgatctcatcagatgtct 17008078  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 17018958 - 17018884
Alignment:
Q  112 ctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtct 186  Q
    ||||||| | || |||||||| ||| |||  |||||| ||||||||| ||||||| |||||||||||||||||||    
T  17018958 ctgaacacactggttctgagcaaccaaccctagaaactttatctgaaccagaaccaatgatctcatcagatgtct 17018884  T

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Target: scaffold0752 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 3881 - 3844
Alignment:
Q  152 atctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  3881 atctgaaccagaacctatgatctcatcagatgtctctg 3844  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 11237521 - 11237488
Alignment:
Q  156 gaatcagaacctatgatctcatcagatgtctctg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  11237521 gaatcagaacctatgatctcatcagatgtctctg 11237488  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 19285414 - 19285451
Alignment:
Q  152 atctgaatcagaacctatgatctcatcagatgtctctg 189  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19285414 atctgaaccagaacctatgatctcatcagatgtctctg 19285451  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 18545062 - 18544948
Alignment:
Q  75 aacccctctgaataatctgttcctgaacacactatttctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatct 174  Q
    |||| ||||||| ||| |||||||||||   || |||||||||||| || |||||||| ||| |||   |||||   |||  ||  ||||||||||||||    
T  18545062 aacctctctgaacaatttgttcctgaactatctgtttctgaacaaactgtttctgagcaacctaccctggaaactcaatcataactagaacctatgatct 18544963  T
Q  175 catcagatgtctctg 189  Q
    |||||||||||||||    
T  18544962 catcagatgtctctg 18544948  T

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Target: scaffold0414 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 5372 - 5406
Alignment:
Q  155 tgaatcagaacctatgatctcatcagatgtctctg 189  Q
    ||||||||||||||||||| |||||||||||||||    
T  5372 tgaatcagaacctatgatcacatcagatgtctctg 5406  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 57409 - 57523
Alignment:
Q  75 aacccctctgaataatctgttcctgaacacactatttctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatct 174  Q
    |||| ||||||| ||| |||||||||||   || ||  |||| ||| || |||||||| ||| |||   ||||||  ||| ||| |||||||||||||||    
T  57409 aacctctctgaacaatttgttcctgaactatctgttcttgaaaaaactgtttctgagcaacctacccttgaaacccaatcagaaccagaacctatgatct 57508  T
Q  175 catcagatgtctctg 189  Q
    |||||||||||||||    
T  57509 catcagatgtctctg 57523  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 13525149 - 13525075
Alignment:
Q  112 ctgaacaaattgcttctgagcgacccacctcagaaaccttatctgaatcagaacctatgatctcatcagatgtct 186  Q
    ||||||||| || |||||||| ||| |||   ||||||  ||| ||| |||||||||||||||||||||||||||    
T  13525149 ctgaacaaactgtttctgagcaacctacccttgaaacccaatcagaaccagaacctatgatctcatcagatgtct 13525075  T

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Target: scaffold0537 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 2904 - 2933
Alignment:
Q  160 cagaacctatgatctcatcagatgtctctg 189  Q
    ||||||||||||||||||||||||||||||    
T  2904 cagaacctatgatctcatcagatgtctctg 2933  T

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