View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_36 (Length: 261)
Name: NF2460_low_36
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 36884630 - 36884407
Alignment:
| Q |
30 |
ctcttttgggtccaatgagatttcctttcgtgcgccatagcaatgtggaggaaacatcaagaagaagtttttccaaaagaggcagatccactggaaggac |
129 |
Q |
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| T |
36884630 |
ctcttttgggtccaatgagatttcctttcgtgcgccatagcaatgtggaggaaacatcaagaagaagtttttccaaaagaggcagatccactggaaggac |
36884531 |
T |
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| Q |
130 |
gaaaatttataccatagcagagcttcagctggctactaacttctttaatgaaggcaaccttctgggagagggatctcttggtcccgtttacaaagctgta |
229 |
Q |
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| T |
36884530 |
gaaaatttataccatagcagagcttcagctggctactaacttctttaatgaaggcaaccttctgggagagggatctcttggtcccgtttacaaagctgta |
36884431 |
T |
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| Q |
230 |
tttcctgagggcaaagtataatct |
253 |
Q |
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| T |
36884430 |
tttcctgagggcaaagtataatct |
36884407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 22554902 - 22554762
Alignment:
| Q |
87 |
caagaagaagtttttccaaaagaggcagatccactggaaggacgaaaatttataccatagcagagcttcagctggctactaacttctttaatgaaggcaa |
186 |
Q |
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|||||||||||||||| |||||| || || ||| |||||||||| |||| || |||| ||| ||||| ||| ||||||| || | ||||| ||| |
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| T |
22554902 |
caagaagaagtttttctgaaagagacaaatacaccagaaggacgaaggtttacacagtagctgaggttcagttggttactaacaatttcagtgaagacaa |
22554803 |
T |
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| Q |
187 |
ccttctgggagagggatctcttggtcccgtttacaaagctg |
227 |
Q |
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| T |
22554802 |
ccttctgggagtaggctctcttggccctgtttacagagctg |
22554762 |
T |
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