View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_4 (Length: 551)
Name: NF2460_low_4
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 60 - 472
Target Start/End: Original strand, 7008370 - 7008781
Alignment:
| Q |
60 |
agcagagacacagacacaaccctgacacatacacgtcaacaccaataaaatgacataattcaatgtaatcaagtgttggtgttgtgtcagtgtcaaacaa |
159 |
Q |
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|||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7008370 |
agcacagacacagacacgaccctgacacatacatgtcaacaccaataaaatgacataattcaatgtaatcaagtgttggtgttctgtcagtgtcaaacaa |
7008469 |
T |
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| Q |
160 |
cgggacacaccttctatcaaaagtgttgatgcaactcatcatgcccgtgcatacaatgctttcctgctcgagtgtttttctcgcttatgagtaaattatg |
259 |
Q |
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| T |
7008470 |
tgggacacaccttcaatcaaaagtgttga-gcaactcatcatgcacgtgcgtacaatgcttgcctgctcgagcacttttctcgcttatgagtaaactatg |
7008568 |
T |
|
| Q |
260 |
agtcaaactcaacaacaattcacgtgtatatttatatgtaaagagttcaaccacataattttaaagcataaagtttaaatcttctcgaatatggttttaa |
359 |
Q |
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| T |
7008569 |
agtcatactcaacaacaattcacgtgtatatttatatgcaaagagttcgaccacataattttaaagcataaagtttaaatcttctcgaatatggttttaa |
7008668 |
T |
|
| Q |
360 |
aatgactaccacttttgattgataataatttctctttccccaatttatgaaaaacaaaagtttatatatgttggtttcttaaacattcctcttaaagcaa |
459 |
Q |
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| T |
7008669 |
aacgactaccacttttaattgataataatttctctttccccaatttatgaaaaacaaaagtttatatatgttggttttttaaacattcctcttaaagcaa |
7008768 |
T |
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| Q |
460 |
caaaactaattgg |
472 |
Q |
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| T |
7008769 |
caaaactaattgg |
7008781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 29049905 - 29049947
Alignment:
| Q |
106 |
aaaatgacataattcaatgtaatcaagtgttggtgttgtgtca |
148 |
Q |
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| T |
29049905 |
aaaattacataattcaatgtaatcatgtgttggtgttgtgtca |
29049947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 7442863 - 7442928
Alignment:
| Q |
104 |
ataaaatgacataattcaatgtaat--caagtgttggtgttgtgtcagtgtcaaacaacgggacac |
167 |
Q |
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| T |
7442863 |
ataaaattacataattcagtgtaattacaagtgttggtgttgtatcagtgtcggacaccgggacac |
7442928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 18147 - 18104
Alignment:
| Q |
106 |
aaaatgacataattcaatgtaat--caagtgttggtgttgtgtc |
147 |
Q |
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| T |
18147 |
aaaataacataattcaatgtaatcgcaagtgttggtgttgtgtc |
18104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 2039888 - 2039848
Alignment:
| Q |
106 |
aaaatgacataattcaatgtaatcaagtgttggtgttgtgt |
146 |
Q |
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| T |
2039888 |
aaaatgacatgattcaatgtaatcatgtattggtgttgtgt |
2039848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 37496724 - 37496767
Alignment:
| Q |
106 |
aaaatgacataattcaatgtaat--caagtgttggtgttgtgtc |
147 |
Q |
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| T |
37496724 |
aaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtc |
37496767 |
T |
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