View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_5 (Length: 530)
Name: NF2460_low_5
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 98 - 520
Target Start/End: Complemental strand, 12603257 - 12602835
Alignment:
| Q |
98 |
aaaatggaattggaaatttctatttaaaataaactgctttttataaaaatgacaatgaactaacagcagaaactgcagcagaaagaaacatgtaattgga |
197 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12603257 |
aaaatggaattggaaatttctatttaaaatgaactgctttttataaaaatgacaacgaactaacagcagaaactgcagcagaaagaaacatgtaattgga |
12603158 |
T |
|
| Q |
198 |
atttctctgattaatatataacaaaactacagaagagagcgaaaaatggaattgaaattgctctttgatatatacataacttgtttttacaatcagtatt |
297 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12603157 |
atttctctgattaatatataacaaaactgcagaagagagcgaaaaatggaactgaaattgctctttcatatatacataacttgtttttacaatcagtatt |
12603058 |
T |
|
| Q |
298 |
tttgaatacattgacttgtgtgaccttctgcctaatactgaaaggatcactcacattacatcgacattgttaactaaaggattgcataaaagcatgttaa |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12603057 |
tttgaatacattgacttgtgtgaccttctgcctaatactgaaaggatcactcacattacattgacattgttaactaaaggattgcataaaagcatgttaa |
12602958 |
T |
|
| Q |
398 |
gatactgactatattcatgttatggcagaatttcagaaccaggtagtgattttgaattagaaaattggcacagttatgtgattaacctgacatgattccc |
497 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12602957 |
gatactgactatattcattttatggcagaatttcagaaccaggtagtgattttgaattagaaaattggcacagttatgcgattaacctgacatgattccc |
12602858 |
T |
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| Q |
498 |
tataaactttgtgtgtgtctgtg |
520 |
Q |
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|||||||||||||||||| |||| |
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| T |
12602857 |
tataaactttgtgtgtgtgtgtg |
12602835 |
T |
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