View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2460_low_9 (Length: 443)
Name: NF2460_low_9
Description: NF2460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2460_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 41703545 - 41703722
Alignment:
| Q |
76 |
aatgagatggacatcatcaaccatgacaacgacgatgatcaatctatctctagaggagtacatgaaaagaaagcatgttctggaatcaccgcaaatccat |
175 |
Q |
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| T |
41703545 |
aatgagattgagatcataaaccatgacaacgacgatgatcaatctatctctagaggagtacatgaaaagaaagcatgttctggaatcaccgcaaatccat |
41703644 |
T |
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| Q |
176 |
gttcatcagtggcactggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt |
253 |
Q |
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| T |
41703645 |
gttcatcagtggcactggcaacacaacaagaaagcaaattttccaatgcagttgacagagtcaaaagaaaatcttctt |
41703722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 176 - 298
Target Start/End: Complemental strand, 41467496 - 41467374
Alignment:
| Q |
176 |
gttcatcagtggcactggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccac |
275 |
Q |
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| T |
41467496 |
gttcatcaggggccctgacaacccaacaaaaaagcaaatttggcaatgcagttgacactgtcaaaagaaaattttctttcagcgacagtgaaacctcgac |
41467397 |
T |
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| Q |
276 |
ttctacttctttcgatgattcat |
298 |
Q |
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| T |
41467396 |
ttctacttcctccgatggttcat |
41467374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 41506970 - 41506883
Alignment:
| Q |
199 |
caacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctt |
286 |
Q |
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| T |
41506970 |
caacaaaaaaccaagtttgcaaatgcagttgacacggtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttctt |
41506883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 41513223 - 41513161
Alignment:
| Q |
191 |
tggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt |
253 |
Q |
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| T |
41513223 |
tggcaacacaacaaaaaagcaaatttcccaatgcagttgacactgttaaaagaaaattttctt |
41513161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 41497706 - 41497620
Alignment:
| Q |
214 |
tttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg |
300 |
Q |
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| T |
41497706 |
tttgcaaatgcggttaacacagtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttcctctgatgattcattg |
41497620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 41522158 - 41522096
Alignment:
| Q |
191 |
tggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt |
253 |
Q |
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| T |
41522158 |
tggcaacacaacaaaaaagcaaatttcccaatgcagttgacacttttaaaagaaaattttctt |
41522096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 320
Target Start/End: Original strand, 41703717 - 41703756
Alignment:
| Q |
281 |
cttctttcgatgattcattgccttttctccataatcttac |
320 |
Q |
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| T |
41703717 |
cttctttcgatggttcattgccttttctccataatcttac |
41703756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 33078038 - 33077964
Alignment:
| Q |
226 |
gttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg |
300 |
Q |
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| T |
33078038 |
gttgacacagtcaaaagaaaatattctttcaccgacagtgaaacctccacttctacgtcctccgatgatttattg |
33077964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 45650399 - 45650429
Alignment:
| Q |
317 |
ttactagaaaacaagttgttattattggagt |
347 |
Q |
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| T |
45650399 |
ttactagaaaacaagttgttattattggagt |
45650429 |
T |
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